Analysis of interatomic Contacts of Structural Units in PDB entry:
3VM8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VM8 entry

There are 2 chains in PDB entry 3VM8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 4GLN 190
B
 GLN 4GLN 190
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 3VM8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 21Right-handed alpha
Helix 2
2
A
66 79Right-handed alpha
Helix 3
3
A
97 111Right-handed alpha
Helix 4
4
A
128 142Right-handed alpha
Helix 5
5
A
149 161Right-handed alpha
Helix 6
6
A
173 189Right-handed alpha
Helix 7
7
B
13 22Right-handed alpha
Helix 8
8
B
66 79Right-handed alpha
Helix 9
9
B
97 111Right-handed alpha
Helix 10
10
B
128 140Right-handed alpha
Helix 11
11
B
149 161Right-handed alpha
Helix 12
12
B
173 189Right-handed alpha
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There are 2 sheets in PDB entry 3VM8. Click on sheet of interest to get list of strands forming it: A, B,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 58first strand
Strand 2
A
32 42anti-parallel
Strand 3
A
85 92anti-parallel
Strand 4
A
114 120parallel
Strand 5
A
144 147parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
49 55first strand
Strand 2
B
35 42anti-parallel
Strand 3
B
85 94anti-parallel
Strand 4
B
114 122parallel
Strand 5
B
145 147parallel
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