Analysis of interatomic Contacts of Structural Units in PDB entry:
3VMK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VMK entry

There are 2 chains in PDB entry 3VMK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS -5GLY 363
B
 HIS -4GLY 363
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 3VMK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 32Right-handed alpha
Helix 2
2
A
44 52Right-handed alpha
Helix 3
3
A
56 65Right-handed alpha
Helix 4
4
A
76 80Right-handed 310
Helix 5
5
A
87 100Right-handed alpha
Helix 6
6
A
115 119Right-handed 310
Helix 7
7
A
122 127Right-handed alpha
Helix 8
8
A
153 156Right-handed 310
Helix 9
9
A
167 183Right-handed alpha
Helix 10
10
A
197 212Right-handed alpha
Helix 11
11
A
224 234Right-handed alpha
Helix 12
12
A
235 238Right-handed 310
Helix 13
13
A
244 260Right-handed alpha
Helix 14
14
A
261 264Right-handed 310
Helix 15
15
A
296 310Right-handed alpha
Helix 16
16
A
313 330Right-handed alpha
Helix 17
17
A
334 338Right-handed 310
Helix 18
18
A
339 346Right-handed 310
Helix 19
19
A
348 362Right-handed alpha
Helix 20
20
B
13 33Right-handed alpha
Helix 21
21
B
44 52Right-handed alpha
Helix 22
22
B
56 65Right-handed alpha
Helix 23
23
B
76 80Right-handed 310
Helix 24
24
B
83 86Right-handed 310
Helix 25
25
B
87 100Right-handed alpha
Helix 26
26
B
115 119Right-handed 310
Helix 27
27
B
122 127Right-handed alpha
Helix 28
28
B
153 156Right-handed 310
Helix 29
29
B
167 183Right-handed alpha
Helix 30
30
B
197 213Right-handed alpha
Helix 31
31
B
224 234Right-handed alpha
Helix 32
32
B
235 238Right-handed 310
Helix 33
33
B
244 260Right-handed alpha
Helix 34
34
B
261 264Right-handed 310
Helix 35
35
B
296 310Right-handed alpha
Helix 36
36
B
313 330Right-handed alpha
Helix 37
37
B
334 338Right-handed 310
Helix 38
38
B
339 346Right-handed 310
Helix 39
39
B
348 361Right-handed alpha
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There are 3 sheets in PDB entry 3VMK. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 40first strand
Strand 2
A
3 10parallel
Strand 3
A
68 73parallel
Strand 4
A
276 280parallel
Strand 5
A
266 270anti-parallel
Strand 6
A
104 110anti-parallel
Strand 7
A
131 137anti-parallel
Strand 8
A
240 243parallel
Strand 9
A
187 192parallel
Strand 10
A
218 223parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
149 151first strand
Strand 2
A
158 166anti-parallel
Strand 3
B
158 166anti-parallel
Strand 4
B
149 151anti-parallel
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There are 10 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
36 40first strand
Strand 2
B
3 10parallel
Strand 3
B
68 73parallel
Strand 4
B
276 280parallel
Strand 5
B
266 270anti-parallel
Strand 6
B
104 110anti-parallel
Strand 7
B
131 137anti-parallel
Strand 8
B
240 243parallel
Strand 9
B
187 192parallel
Strand 10
B
218 223parallel
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