Analysis of interatomic Contacts of Structural Units in PDB entry:
3VMO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VMO entry

There is 1 chain in PDB entry 3VMO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 104HIS 735
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 3VMO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
224 228Right-handed 310
Helix 2
2
A
232 234Right-handed 310
Helix 3
3
A
235 249Right-handed alpha
Helix 4
4
A
287 301Right-handed alpha
Helix 5
5
A
322 325Right-handed 310
Helix 6
6
A
359 378Right-handed alpha
Helix 7
7
A
396 398Right-handed 310
Helix 8
8
A
402 406Right-handed 310
Helix 9
9
A
409 424Right-handed alpha
Helix 10
10
A
433 437Right-handed 310
Helix 11
11
A
438 443Right-handed alpha
Helix 12
12
A
469 485Right-handed alpha
Helix 13
13
A
507 515Right-handed alpha
Helix 14
14
A
520 534Right-handed alpha
Helix 15
15
A
546 550Right-handed 310
Helix 16
16
A
569 586Right-handed alpha
Helix 17
17
A
586 592Right-handed alpha
Helix 18
18
A
652 656Right-handed 310
Helix 19
19
A
676 684Right-handed alpha
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There are 11 sheets in PDB entry 3VMO. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
109 110first strand
Strand 2
A
121 124anti-parallel
Strand 3
A
172 174anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 128first strand
Strand 2
A
164 166anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
148 159first strand
Strand 2
A
135 145anti-parallel
Strand 3
A
183 192anti-parallel
Strand 4
A
198 208anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
428 431first strand
Strand 2
A
381 385parallel
Strand 3
A
303 309parallel
Strand 4
A
253 256parallel
Strand 5
A
218 221parallel
Strand 6
A
541 543parallel
Strand 7
A
554 555anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
272 274first strand
Strand 2
A
284 286anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
312 314first strand
Strand 2
A
352 354anti-parallel
Strand 3
A
343 344anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
327 329first strand
Strand 2
A
391 394anti-parallel
Strand 3
A
407 408anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
451 453first strand
Strand 2
A
489 491parallel
Strand 3
A
537 539parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
459 460first strand
Strand 2
A
463 466anti-parallel
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There are 6 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
595 596first strand
Strand 2
A
623 629anti-parallel
Strand 3
A
633 640anti-parallel
Strand 4
A
727 733anti-parallel
Strand 5
A
687 690anti-parallel
Strand 6
A
700 702anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
602 604first strand
Strand 2
A
663 671anti-parallel
Strand 3
A
715 724anti-parallel
Strand 4
A
705 709anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il