Analysis of interatomic Contacts of Structural Units in PDB entry:
3VMQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VMQ entry

There are 2 chains in PDB entry 3VMQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 41ARG 269
B
 ARG 41ARG 269
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 3VMQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
41 66Right-handed alpha
Helix 2
2
A
69 79Right-handed 310
Helix 3
3
A
84 88Right-handed 310
Helix 4
4
A
89 101Right-handed alpha
Helix 5
5
A
111 118Right-handed alpha
Helix 6
6
A
133 143Right-handed alpha
Helix 7
7
A
149 167Right-handed alpha
Helix 8
8
A
168 178Right-handed alpha
Helix 9
9
A
188 198Right-handed alpha
Helix 10
10
A
212 223Right-handed alpha
Helix 11
11
A
235 252Right-handed alpha
Helix 12
12
A
256 268Right-handed alpha
Helix 13
13
B
42 66Right-handed alpha
Helix 14
14
B
71 79Right-handed 310
Helix 15
15
B
84 88Right-handed 310
Helix 16
16
B
89 101Right-handed alpha
Helix 17
17
B
111 118Right-handed alpha
Helix 18
18
B
133 143Right-handed alpha
Helix 19
19
B
149 167Right-handed alpha
Helix 20
20
B
168 178Right-handed alpha
Helix 21
21
B
188 197Right-handed alpha
Helix 22
22
B
212 224Right-handed alpha
Helix 23
23
B
235 252Right-handed alpha
Helix 24
24
B
256 268Right-handed alpha
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There is 1 sheet ( A) in PDB entry 3VMQ.

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
199 200first strand
Strand 2
B
209 210parallel
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