Analysis of interatomic Contacts of Structural Units in PDB entry:
3VMV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VMV entry

There is 1 chain in PDB entry 3VMV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 3ASN 326
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 3VMV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 10Right-handed 310
Helix 2
2
A
27 41Right-handed alpha
Helix 3
3
A
186 190Right-handed 310
Helix 4
4
A
308 320Right-handed alpha
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There are 3 sheets in PDB entry 3VMV. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 25first strand
Strand 2
A
48 52parallel
Strand 3
A
78 85parallel
Strand 4
A
102 108parallel
Strand 5
A
130 135parallel
Strand 6
A
163 168parallel
Strand 7
A
192 197parallel
Strand 8
A
215 219parallel
Strand 9
A
238 242parallel
Strand 10
A
276 280parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 57first strand
Strand 2
A
91 93parallel
Strand 3
A
111 113parallel
Strand 4
A
138 140parallel
Strand 5
A
171 177parallel
Strand 6
A
200 206parallel
Strand 7
A
222 226parallel
Strand 8
A
245 249parallel
Strand 9
A
283 285parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 68first strand
Strand 2
A
97 100parallel
Strand 3
A
123 126parallel
Strand 4
A
156 158parallel
Strand 5
A
179 181parallel
Strand 6
A
210 212parallel
Strand 7
A
231 234parallel
Strand 8
A
265 266parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il