Analysis of interatomic Contacts of Structural Units in PDB entry:
3VN5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VN5 entry

There is 1 chain in PDB entry 3VN5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 2ASN 256
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 3VN5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
7 21Right-handed alpha
Helix 2
2
A
56 66Right-handed alpha
Helix 3
3
A
67 68Right-handed 310
Helix 4
4
A
69 73Right-handed 310
Helix 5
5
A
96 98Right-handed 310
Helix 6
6
A
99 106Right-handed alpha
Helix 7
7
A
115 127Right-handed alpha
Helix 8
8
A
128 130Right-handed 310
Helix 9
9
A
138 150Right-handed alpha
Helix 10
10
A
151 172Right-handed alpha
Helix 11
11
A
200 226Right-handed alpha
Helix 12
12
A
234 243Right-handed alpha
Helix 13
13
A
246 250Right-handed 310
Helix 14
14
A
252 256Right-handed 310
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There are 2 sheets in PDB entry 3VN5. Click on sheet of interest to get list of strands forming it: A, B,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 5first strand
Strand 2
A
49 53anti-parallel
Strand 3
A
40 44anti-parallel
Strand 4
A
33 37anti-parallel
Strand 5
A
24 25anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 137first strand
Strand 2
A
88 94anti-parallel
Strand 3
A
75 79anti-parallel
Strand 4
A
176 178parallel
Strand 5
A
191 193parallel
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