Analysis of interatomic Contacts of Structural Units in PDB entry:
3VND


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VND entry

There are 8 chains in PDB entry 3VND (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1THR 267
B
 MET 1THR 267
C
 MET 1THR 267
D
 MET 1THR 267
E
 MET 1THR 267
F
 MET 1THR 267
G
 MET 1THR 267
H
 MET 1THR 267
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are104 helices in PDB entry 3VND. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 16Right-handed alpha
Helix 2
2
A
30 44Right-handed alpha
Helix 3
3
A
62 75Right-handed alpha
Helix 4
4
A
78 93Right-handed alpha
Helix 5
5
A
103 111Right-handed alpha
Helix 6
6
A
111 123Right-handed alpha
Helix 7
7
A
133 136Right-handed 310
Helix 8
8
A
137 147Right-handed alpha
Helix 9
9
A
160 171Right-handed alpha
Helix 10
10
A
194 203Right-handed alpha
Helix 11
11
A
217 227Right-handed alpha
Helix 12
12
A
235 245Right-handed alpha
Helix 13
13
A
248 266Right-handed alpha
Helix 14
14
B
3 15Right-handed alpha
Helix 15
15
B
30 44Right-handed alpha
Helix 16
16
B
62 75Right-handed alpha
Helix 17
17
B
78 93Right-handed alpha
Helix 18
18
B
103 111Right-handed alpha
Helix 19
19
B
111 123Right-handed alpha
Helix 20
20
B
133 136Right-handed 310
Helix 21
21
B
137 147Right-handed alpha
Helix 22
22
B
160 171Right-handed alpha
Helix 23
23
B
194 204Right-handed alpha
Helix 24
24
B
217 228Right-handed alpha
Helix 25
25
B
235 245Right-handed alpha
Helix 26
26
B
248 266Right-handed alpha
Helix 27
27
C
2 15Right-handed alpha
Helix 28
28
C
30 44Right-handed alpha
Helix 29
29
C
62 75Right-handed alpha
Helix 30
30
C
78 93Right-handed alpha
Helix 31
31
C
103 111Right-handed alpha
Helix 32
32
C
111 122Right-handed alpha
Helix 33
33
C
133 136Right-handed 310
Helix 34
34
C
137 147Right-handed alpha
Helix 35
35
C
160 171Right-handed alpha
Helix 36
36
C
194 204Right-handed alpha
Helix 37
37
C
217 227Right-handed alpha
Helix 38
38
C
235 245Right-handed alpha
Helix 39
39
C
248 266Right-handed alpha
Helix 40
40
D
3 15Right-handed alpha
Helix 41
41
D
30 44Right-handed alpha
Helix 42
42
D
62 75Right-handed alpha
Helix 43
43
D
78 93Right-handed alpha
Helix 44
44
D
103 110Right-handed alpha
Helix 45
45
D
111 123Right-handed alpha
Helix 46
46
D
133 136Right-handed 310
Helix 47
47
D
137 147Right-handed alpha
Helix 48
48
D
160 171Right-handed alpha
Helix 49
49
D
194 203Right-handed alpha
Helix 50
50
D
217 227Right-handed alpha
Helix 51
51
D
235 245Right-handed alpha
Helix 52
52
D
248 266Right-handed alpha
Helix 53
53
E
2 15Right-handed alpha
Helix 54
54
E
30 44Right-handed alpha
Helix 55
55
E
62 75Right-handed alpha
Helix 56
56
E
78 93Right-handed alpha
Helix 57
57
E
103 109Right-handed alpha
Helix 58
58
E
111 123Right-handed alpha
Helix 59
59
E
133 136Right-handed 310
Helix 60
60
E
137 146Right-handed alpha
Helix 61
61
E
160 171Right-handed alpha
Helix 62
62
E
194 204Right-handed alpha
Helix 63
63
E
217 227Right-handed alpha
Helix 64
64
E
235 246Right-handed alpha
Helix 65
65
E
248 265Right-handed alpha
Helix 66
66
F
3 16Right-handed alpha
Helix 67
67
F
30 44Right-handed alpha
Helix 68
68
F
62 75Right-handed alpha
Helix 69
69
F
78 93Right-handed alpha
Helix 70
70
F
103 111Right-handed alpha
Helix 71
71
F
111 123Right-handed alpha
Helix 72
72
F
133 136Right-handed 310
Helix 73
73
F
137 147Right-handed alpha
Helix 74
74
F
160 171Right-handed alpha
Helix 75
75
F
194 204Right-handed alpha
Helix 76
76
F
217 227Right-handed alpha
Helix 77
77
F
235 245Right-handed alpha
Helix 78
78
F
248 266Right-handed alpha
Helix 79
79
G
2 16Right-handed alpha
Helix 80
80
G
30 44Right-handed alpha
Helix 81
81
G
62 75Right-handed alpha
Helix 82
82
G
78 93Right-handed alpha
Helix 83
83
G
103 111Right-handed alpha
Helix 84
84
G
111 123Right-handed alpha
Helix 85
85
G
133 136Right-handed 310
Helix 86
86
G
137 147Right-handed alpha
Helix 87
87
G
160 171Right-handed alpha
Helix 88
88
G
194 205Right-handed alpha
Helix 89
89
G
217 227Right-handed alpha
Helix 90
90
G
235 246Right-handed alpha
Helix 91
91
G
248 266Right-handed alpha
Helix 92
92
H
3 15Right-handed alpha
Helix 93
93
H
30 44Right-handed alpha
Helix 94
94
H
62 75Right-handed alpha
Helix 95
95
H
78 93Right-handed alpha
Helix 96
96
H
103 111Right-handed alpha
Helix 97
97
H
111 123Right-handed alpha
Helix 98
98
H
133 136Right-handed 310
Helix 99
99
H
137 147Right-handed alpha
Helix 100
100
H
160 171Right-handed alpha
Helix 101
101
H
194 204Right-handed alpha
Helix 102
102
H
217 227Right-handed alpha
Helix 103
103
H
235 245Right-handed alpha
Helix 104
104
H
248 265Right-handed alpha
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There are 8 sheets in PDB entry 3VND. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 152first strand
Strand 2
A
126 129parallel
Strand 3
A
98 102parallel
Strand 4
A
49 52parallel
Strand 5
A
19 25parallel
Strand 6
A
231 234parallel
Strand 7
A
209 211parallel
Strand 8
A
175 177parallel
Strand 9
A
154 155parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
150 152first strand
Strand 2
B
126 129parallel
Strand 3
B
98 102parallel
Strand 4
B
49 52parallel
Strand 5
B
19 25parallel
Strand 6
B
231 234parallel
Strand 7
B
209 211parallel
Strand 8
B
175 177parallel
Strand 9
B
154 155parallel
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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
150 151first strand
Strand 2
C
126 129parallel
Strand 3
C
98 102parallel
Strand 4
C
49 52parallel
Strand 5
C
19 25parallel
Strand 6
C
231 234parallel
Strand 7
C
209 211parallel
Strand 8
C
175 177parallel
Strand 9
C
154 155parallel
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There are 9 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
150 152first strand
Strand 2
D
126 129parallel
Strand 3
D
98 102parallel
Strand 4
D
49 52parallel
Strand 5
D
19 25parallel
Strand 6
D
231 234parallel
Strand 7
D
209 211parallel
Strand 8
D
175 177parallel
Strand 9
D
154 155parallel
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There are 9 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
150 151first strand
Strand 2
E
126 129parallel
Strand 3
E
98 102parallel
Strand 4
E
49 52parallel
Strand 5
E
19 25parallel
Strand 6
E
231 234parallel
Strand 7
E
209 211parallel
Strand 8
E
175 177parallel
Strand 9
E
154 155parallel
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There are 9 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
150 152first strand
Strand 2
F
126 129parallel
Strand 3
F
98 102parallel
Strand 4
F
49 52parallel
Strand 5
F
19 25parallel
Strand 6
F
231 234parallel
Strand 7
F
209 211parallel
Strand 8
F
175 177parallel
Strand 9
F
154 155parallel
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There are 9 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
150 152first strand
Strand 2
G
126 129parallel
Strand 3
G
98 102parallel
Strand 4
G
49 52parallel
Strand 5
G
19 25parallel
Strand 6
G
231 234parallel
Strand 7
G
209 211parallel
Strand 8
G
175 177parallel
Strand 9
G
154 155parallel
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There are 9 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
150 152first strand
Strand 2
H
126 129parallel
Strand 3
H
98 102parallel
Strand 4
H
49 52parallel
Strand 5
H
19 25parallel
Strand 6
H
231 234parallel
Strand 7
H
209 211parallel
Strand 8
H
175 177parallel
Strand 9
H
154 155parallel
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