Analysis of interatomic Contacts of Structural Units in PDB entry:
3VNL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VNL entry

There are 4 chains in PDB entry 3VNL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 0HIS 290
B
 MET 1GLU 288
C
 MET 1GLU 288
D
 MET 1CYS 289
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 3VNL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 10Right-handed 310
Helix 2
2
A
17 29Right-handed alpha
Helix 3
3
A
39 43Right-handed 310
Helix 4
4
A
44 58Right-handed alpha
Helix 5
5
A
69 73Right-handed 310
Helix 6
6
A
78 100Right-handed alpha
Helix 7
7
A
121 144Right-handed alpha
Helix 8
8
A
162 174Right-handed alpha
Helix 9
9
A
184 191Right-handed alpha
Helix 10
10
A
193 202Right-handed alpha
Helix 11
11
A
224 235Right-handed alpha
Helix 12
12
A
250 258Right-handed alpha
Helix 13
13
A
268 288Right-handed alpha
Helix 14
14
B
8 10Right-handed 310
Helix 15
15
B
17 29Right-handed alpha
Helix 16
16
B
39 43Right-handed 310
Helix 17
17
B
44 59Right-handed alpha
Helix 18
18
B
69 73Right-handed 310
Helix 19
19
B
78 100Right-handed alpha
Helix 20
20
B
121 143Right-handed alpha
Helix 21
21
B
162 174Right-handed alpha
Helix 22
22
B
184 191Right-handed alpha
Helix 23
23
B
193 202Right-handed alpha
Helix 24
24
B
224 236Right-handed alpha
Helix 25
25
B
250 258Right-handed alpha
Helix 26
26
B
268 287Right-handed alpha
Helix 27
27
C
8 10Right-handed 310
Helix 28
28
C
17 29Right-handed alpha
Helix 29
29
C
39 43Right-handed 310
Helix 30
30
C
44 58Right-handed alpha
Helix 31
31
C
69 73Right-handed 310
Helix 32
32
C
78 100Right-handed alpha
Helix 33
33
C
121 143Right-handed alpha
Helix 34
34
C
162 174Right-handed alpha
Helix 35
35
C
184 191Right-handed alpha
Helix 36
36
C
193 202Right-handed alpha
Helix 37
37
C
224 236Right-handed alpha
Helix 38
38
C
250 258Right-handed alpha
Helix 39
39
C
268 288Right-handed alpha
Helix 40
40
D
8 10Right-handed 310
Helix 41
41
D
17 29Right-handed alpha
Helix 42
42
D
39 43Right-handed 310
Helix 43
43
D
44 58Right-handed alpha
Helix 44
44
D
69 73Right-handed 310
Helix 45
45
D
78 98Right-handed alpha
Helix 46
46
D
121 143Right-handed alpha
Helix 47
47
D
162 174Right-handed alpha
Helix 48
48
D
184 191Right-handed alpha
Helix 49
49
D
193 202Right-handed alpha
Helix 50
50
D
224 235Right-handed alpha
Helix 51
51
D
250 257Right-handed alpha
Helix 52
52
D
268 288Right-handed alpha
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There are 4 sheets in PDB entry 3VNL. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 6first strand
Strand 2
A
32 36parallel
Strand 3
A
61 65parallel
Strand 4
A
103 106parallel
Strand 5
A
146 150parallel
Strand 6
A
178 183parallel
Strand 7
A
205 210parallel
Strand 8
A
240 243parallel
Strand 9
A
2 6parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 6first strand
Strand 2
B
32 36parallel
Strand 3
B
61 65parallel
Strand 4
B
103 106parallel
Strand 5
B
146 150parallel
Strand 6
B
178 183parallel
Strand 7
B
205 210parallel
Strand 8
B
240 243parallel
Strand 9
B
2 6parallel
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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2 6first strand
Strand 2
C
32 36parallel
Strand 3
C
61 65parallel
Strand 4
C
103 106parallel
Strand 5
C
146 150parallel
Strand 6
C
178 183parallel
Strand 7
C
205 210parallel
Strand 8
C
240 243parallel
Strand 9
C
2 6parallel
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There are 9 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
2 6first strand
Strand 2
D
32 36parallel
Strand 3
D
61 65parallel
Strand 4
D
103 106parallel
Strand 5
D
146 150parallel
Strand 6
D
178 183parallel
Strand 7
D
205 210parallel
Strand 8
D
240 243parallel
Strand 9
D
2 6parallel
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