Analysis of interatomic Contacts of Structural Units in PDB entry:
3VNP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VNP entry

There are 3 chains in PDB entry 3VNP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 0GLN 170
B
 GLY 0GLN 170
C
 GLY 0GLN 170
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 3 helices in PDB entry 3VNP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
144 170Right-handed alpha
Helix 2
2
B
144 170Right-handed alpha
Helix 3
3
C
144 169Right-handed alpha
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There are 9 sheets in PDB entry 3VNP. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1 3first strand
Strand 2
A
23 30parallel
Strand 3
A
41 51parallel
Strand 4
A
62 64parallel
Strand 5
A
84 86parallel
Strand 6
A
101 102parallel
Strand 7
A
119 120parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 12first strand
Strand 2
A
23 30parallel
Strand 3
A
41 51parallel
Strand 4
A
71 73parallel
Strand 5
A
89 90parallel
Strand 6
A
107 108parallel
Strand 7
A
125 126parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 18first strand
Strand 2
A
35 36parallel
Strand 3
A
56 57parallel
Strand 4
A
78 79parallel
Strand 5
A
95 96parallel
Strand 6
A
113 114parallel
Strand 7
A
130 133parallel
Strand 8
A
138 142anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1 3first strand
Strand 2
B
23 30parallel
Strand 3
B
41 51parallel
Strand 4
B
62 64parallel
Strand 5
B
84 86parallel
Strand 6
B
101 102parallel
Strand 7
B
119 120parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 12first strand
Strand 2
B
23 30parallel
Strand 3
B
41 51parallel
Strand 4
B
71 73parallel
Strand 5
B
89 90parallel
Strand 6
B
107 108parallel
Strand 7
B
125 126parallel
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There are 8 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
17 18first strand
Strand 2
B
35 36parallel
Strand 3
B
56 57parallel
Strand 4
B
78 79parallel
Strand 5
B
95 96parallel
Strand 6
B
113 114parallel
Strand 7
B
130 133parallel
Strand 8
B
138 142anti-parallel
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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1 3first strand
Strand 2
C
23 30parallel
Strand 3
C
41 51parallel
Strand 4
C
62 64parallel
Strand 5
C
84 86parallel
Strand 6
C
101 102parallel
Strand 7
C
119 120parallel
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There are 7 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
11 12first strand
Strand 2
C
23 30parallel
Strand 3
C
41 51parallel
Strand 4
C
71 73parallel
Strand 5
C
89 90parallel
Strand 6
C
107 108parallel
Strand 7
C
125 126parallel
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There are 8 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
17 18first strand
Strand 2
C
35 36parallel
Strand 3
C
56 57parallel
Strand 4
C
78 79parallel
Strand 5
C
95 96parallel
Strand 6
C
113 114parallel
Strand 7
C
130 133parallel
Strand 8
C
138 142anti-parallel
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