Analysis of interatomic Contacts of Structural Units in PDB entry:
3VNQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VNQ entry

There is 1 chain in PDB entry 3VNQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 7TRP 517
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 3VNQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 14Right-handed alpha
Helix 2
2
A
16 28Right-handed alpha
Helix 3
3
A
43 60Right-handed alpha
Helix 4
4
A
75 88Right-handed alpha
Helix 5
5
A
100 112Right-handed alpha
Helix 6
6
A
131 137Right-handed alpha
Helix 7
7
A
177 187Right-handed alpha
Helix 8
8
A
188 190Right-handed 310
Helix 9
9
A
207 219Right-handed alpha
Helix 10
10
A
228 232Right-handed 310
Helix 11
11
A
234 245Right-handed alpha
Helix 12
12
A
253 267Right-handed alpha
Helix 13
13
A
285 288Right-handed 310
Helix 14
14
A
289 297Right-handed alpha
Helix 15
15
A
309 313Right-handed 310
Helix 16
16
A
322 327Right-handed alpha
Helix 17
17
A
374 382Right-handed alpha
Helix 18
18
A
430 439Right-handed alpha
Helix 19
19
A
473 482Right-handed alpha
Helix 20
20
A
486 490Right-handed 310
Helix 21
21
A
509 517Right-handed alpha
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There are 6 sheets in PDB entry 3VNQ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 42first strand
Strand 2
A
32 36anti-parallel
Strand 3
A
223 226parallel
Strand 4
A
198 201parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 94first strand
Strand 2
A
67 71parallel
Strand 3
A
115 118parallel
Strand 4
A
129 130parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
157 162first strand
Strand 2
A
172 176anti-parallel
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There are 9 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
249 252first strand
Strand 2
A
276 279parallel
Strand 3
A
302 307parallel
Strand 4
A
317 320anti-parallel
Strand 5
A
332 336anti-parallel
Strand 6
A
411 416anti-parallel
Strand 7
A
397 405anti-parallel
Strand 8
A
357 364anti-parallel
Strand 9
A
340 345anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
420 423first strand
Strand 2
A
426 429anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
443 454first strand
Strand 2
A
457 466anti-parallel
Strand 3
A
493 496parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il