Analysis of interatomic Contacts of Structural Units in PDB entry:
3VNU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VNU entry

There are 3 chains in PDB entry 3VNU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2ARG 1264
G
 C 2003 C 2008
T
 G 2101 G 2106
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 3VNU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
6 10Right-handed 310
Helix 2
2
A
20 25Right-handed alpha
Helix 3
3
A
34 44Right-handed alpha
Helix 4
4
A
45 52Right-handed alpha
Helix 5
5
A
80 85Right-handed alpha
Helix 6
6
A
88 94Right-handed alpha
Helix 7
7
A
98 103Right-handed alpha
Helix 8
8
A
107 115Right-handed alpha
Helix 9
9
A
115 124Right-handed alpha
Helix 10
10
A
165 177Right-handed alpha
Helix 11
11
A
187 206Right-handed alpha
Helix 12
12
A
208 228Right-handed alpha
Helix 13
13
A
241 249Right-handed alpha
Helix 14
14
A
271 285Right-handed alpha
Helix 15
15
A
305 307Right-handed 310
Helix 16
16
A
308 323Right-handed alpha
Helix 17
17
A
369 377Right-handed alpha
Helix 18
18
A
399 409Right-handed alpha
Helix 19
19
A
427 444Right-handed alpha
Helix 20
20
A
448 452Right-handed 310
Helix 21
21
A
458 464Right-handed alpha
Helix 22
22
A
466 478Right-handed alpha
Helix 23
23
A
567 571Right-handed 310
Helix 24
24
A
597 601Right-handed 310
Helix 25
25
A
702 714Right-handed alpha
Helix 26
26
A
722 733Right-handed alpha
Helix 27
27
A
734 736Right-handed 310
Helix 28
28
A
744 748Right-handed 310
Helix 29
29
A
756 770Right-handed alpha
Helix 30
30
A
783 804Right-handed alpha
Helix 31
31
A
816 834Right-handed alpha
Helix 32
32
A
839 844Right-handed alpha
Helix 33
33
A
863 868Right-handed alpha
Helix 34
34
A
874 876Right-handed 310
Helix 35
35
A
877 886Right-handed alpha
Helix 36
36
A
920 937Right-handed alpha
Helix 37
37
A
938 940Right-handed 310
Helix 38
38
A
948 962Right-handed alpha
Helix 39
39
A
971 976Right-handed alpha
Helix 40
40
A
977 985Right-handed alpha
Helix 41
41
A
986 996Right-handed alpha
Helix 42
42
A
1021 1040Right-handed alpha
Helix 43
43
A
1044 1048Right-handed 310
Helix 44
44
A
1061 1072Right-handed alpha
Helix 45
45
A
1112 1127Right-handed alpha
Helix 46
46
A
1134 1146Right-handed alpha
Helix 47
47
A
1150 1155Right-handed alpha
Helix 48
48
A
1198 1213Right-handed alpha
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There are 14 sheets in PDB entry 3VNU. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 66first strand
Strand 2
A
70 77anti-parallel
Strand 3
A
131 139anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 144first strand
Strand 2
A
152 158anti-parallel
Strand 3
A
147 148anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 144first strand
Strand 2
A
152 158anti-parallel
Strand 3
A
255 260anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
351 352first strand
Strand 2
A
360 365anti-parallel
Strand 3
A
296 303parallel
Strand 4
A
385 391parallel
Strand 5
A
416 420parallel
Strand 6
A
454 456parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
496 498first strand
Strand 2
A
576 578anti-parallel
Strand 3
A
526 530anti-parallel
Strand 4
A
536 544anti-parallel
Strand 5
A
557 563anti-parallel
Strand 6
A
509 516anti-parallel
Strand 7
A
501 505anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
521 522first strand
Strand 2
A
552 553anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
624 625first strand
Strand 2
A
640 653anti-parallel
Strand 3
A
584 595anti-parallel
Strand 4
A
666 676anti-parallel
Strand 5
A
658 663anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
902 903first strand
Strand 2
A
917 918anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
964 967first strand
Strand 2
A
1054 1058anti-parallel
Strand 3
A
1049 1051anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1000 1002first strand
Strand 2
A
1008 1010anti-parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1087 1090first strand
Strand 2
A
1093 1096anti-parallel
Strand 3
A
1099 1100anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1128 1129first strand
Strand 2
A
1132 1133anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1156 1157first strand
Strand 2
A
1166 1167parallel
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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1177 1179first strand
Strand 2
A
1182 1195anti-parallel
Strand 3
A
1247 1260anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il