Analysis of interatomic Contacts of Structural Units in PDB entry:
3VNY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VNY entry

There is 1 chain in PDB entry 3VNY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 18HIS 483
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 3VNY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
47 51Right-handed 310
Helix 2
2
A
59 70Right-handed alpha
Helix 3
3
A
79 83Right-handed 310
Helix 4
4
A
92 96Right-handed 310
Helix 5
5
A
117 132Right-handed alpha
Helix 6
6
A
145 161Right-handed alpha
Helix 7
7
A
173 175Right-handed 310
Helix 8
8
A
176 181Right-handed alpha
Helix 9
9
A
188 207Right-handed alpha
Helix 10
10
A
220 222Right-handed 310
Helix 11
11
A
223 231Right-handed alpha
Helix 12
12
A
232 235Right-handed 310
Helix 13
13
A
254 259Right-handed alpha
Helix 14
14
A
262 280Right-handed alpha
Helix 15
15
A
303 320Right-handed alpha
Helix 16
16
A
348 361Right-handed alpha
Helix 17
17
A
440 444Right-handed 310
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There are 5 sheets in PDB entry 3VNY. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
433 434first strand
Strand 2
A
415 422anti-parallel
Strand 3
A
451 454anti-parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
433 434first strand
Strand 2
A
415 422anti-parallel
Strand 3
A
468 474anti-parallel
Strand 4
A
391 397anti-parallel
Strand 5
A
379 386anti-parallel
Strand 6
A
363 371anti-parallel
Strand 7
A
20 35anti-parallel
Strand 8
A
404 409parallel
Strand 9
A
460 464anti-parallel
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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 45first strand
Strand 2
A
74 78parallel
Strand 3
A
134 139parallel
Strand 4
A
165 170parallel
Strand 5
A
212 217parallel
Strand 6
A
237 245parallel
Strand 7
A
283 291parallel
Strand 8
A
324 327parallel
Strand 9
A
41 45parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 87first strand
Strand 2
A
114 116parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
337 340first strand
Strand 2
A
344 347anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il