Analysis of interatomic Contacts of Structural Units in PDB entry:
3VOC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VOC entry

There is 1 chain in PDB entry 3VOC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1PRO 416
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 3VOC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
19 33Right-handed alpha
Helix 2
2
A
44 48Right-handed alpha
Helix 3
3
A
57 70Right-handed alpha
Helix 4
4
A
96 102Right-handed 310
Helix 5
5
A
104 109Right-handed alpha
Helix 6
6
A
127 145Right-handed alpha
Helix 7
7
A
146 151Right-handed 310
Helix 8
8
A
159 163Right-handed 310
Helix 9
9
A
170 174Right-handed 310
Helix 10
10
A
187 203Right-handed alpha
Helix 11
11
A
204 213Right-handed alpha
Helix 12
12
A
218 222Right-handed 310
Helix 13
13
A
239 269Right-handed alpha
Helix 14
14
A
294 301Right-handed alpha
Helix 15
15
A
304 316Right-handed alpha
Helix 16
16
A
337 353Right-handed alpha
Helix 17
17
A
366 379Right-handed alpha
Helix 18
18
A
388 392Right-handed 310
Helix 19
19
A
402 410Right-handed alpha
Helix 20
20
A
411 414Right-handed 310
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There are 3 sheets in PDB entry 3VOC. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 11first strand
Strand 2
A
37 43parallel
Strand 3
A
73 79parallel
Strand 4
A
153 156parallel
Strand 5
A
275 279parallel
Strand 6
A
318 321parallel
Strand 7
A
356 359parallel
Strand 8
A
383 386parallel
Strand 9
A
7 11parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 84first strand
Strand 2
A
92 93anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
110 111first strand
Strand 2
A
117 118anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il