Analysis of interatomic Contacts of Structural Units in PDB entry:
3VOI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VOI entry

There is 1 chain in PDB entry 3VOI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 76ALA 435
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 3VOI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
89 103Right-handed alpha
Helix 2
2
A
105 115Right-handed alpha
Helix 3
3
A
116 118Right-handed 310
Helix 4
4
A
126 128Right-handed 310
Helix 5
5
A
129 148Right-handed alpha
Helix 6
6
A
175 178Right-handed 310
Helix 7
7
A
179 198Right-handed alpha
Helix 8
8
A
210 218Right-handed alpha
Helix 9
9
A
221 244Right-handed alpha
Helix 10
10
A
255 260Right-handed alpha
Helix 11
11
A
261 279Right-handed alpha
Helix 12
12
A
304 308Right-handed 310
Helix 13
13
A
314 329Right-handed alpha
Helix 14
14
A
399 404Right-handed 310
Helix 15
15
A
418 428Right-handed alpha
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There are 2 sheets in PDB entry 3VOI. Click on sheet of interest to get list of strands forming it: A, B,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 86first strand
Strand 2
A
151 157parallel
Strand 3
A
122 124parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 86first strand
Strand 2
A
151 157parallel
Strand 3
A
202 207parallel
Strand 4
A
248 252parallel
Strand 5
A
285 290parallel
Strand 6
A
334 338parallel
Strand 7
A
375 379parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il