Analysis of interatomic Contacts of Structural Units in PDB entry:
3VOQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VOQ entry

There are 2 chains in PDB entry 3VOQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLY 369ALA 490
B
GLY 369SER 491
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 3VOQ. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
369 379Right-handed alpha
Helix 2
2
A
471 488Right-handed alpha
Helix 3
3
B
370 382Right-handed alpha
Helix 4
4
B
471 488Right-handed alpha
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There are 2 sheets in PDB entry 3VOQ. Click on sheet of interest to get list of strands forming it: A, B,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
430 433first strand
Strand 2
A
408 413anti-parallel
Strand 3
A
396 404anti-parallel
Strand 4
A
384 392anti-parallel
Strand 5
A
462 470anti-parallel
Strand 6
A
451 459anti-parallel
Strand 7
A
437 445anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
430 433first strand
Strand 2
B
408 413anti-parallel
Strand 3
B
396 404anti-parallel
Strand 4
B
384 393anti-parallel
Strand 5
B
462 470anti-parallel
Strand 6
B
450 459anti-parallel
Strand 7
B
437 447anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il