Analysis of interatomic Contacts of Structural Units in PDB entry:
3VOS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VOS entry

There is 1 chain in PDB entry 3VOS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 1THR 342
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 3VOS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 25Right-handed alpha
Helix 2
2
A
28 30Right-handed 310
Helix 3
3
A
73 87Right-handed alpha
Helix 4
4
A
112 117Right-handed alpha
Helix 5
5
A
129 147Right-handed alpha
Helix 6
6
A
158 162Right-handed 310
Helix 7
7
A
163 178Right-handed alpha
Helix 8
8
A
179 186Right-handed 310
Helix 9
9
A
222 237Right-handed alpha
Helix 10
10
A
269 280Right-handed alpha
Helix 11
11
A
290 295Right-handed alpha
Helix 12
12
A
311 314Right-handed 310
Helix 13
13
A
330 342Right-handed alpha
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There are 2 sheets in PDB entry 3VOS. Click on sheet of interest to get list of strands forming it: A, B,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 47first strand
Strand 2
A
50 56anti-parallel
Strand 3
A
32 36parallel
Strand 4
A
5 8parallel
Strand 5
A
67 70parallel
Strand 6
A
90 93parallel
Strand 7
A
124 126parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
242 246first strand
Strand 2
A
148 156parallel
Strand 3
A
256 264anti-parallel
Strand 4
A
316 323anti-parallel
Strand 5
A
300 307anti-parallel
Strand 6
A
283 285parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il