Analysis of interatomic Contacts of Structural Units in PDB entry:
3VOT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VOT entry

There are 2 chains in PDB entry 3VOT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2ASN 417
B
 THR 2ASN 417
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 3VOT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
18 27Right-handed alpha
Helix 2
2
A
59 74Right-handed alpha
Helix 3
3
A
83 85Right-handed 310
Helix 4
4
A
86 97Right-handed alpha
Helix 5
5
A
103 112Right-handed alpha
Helix 6
6
A
112 123Right-handed alpha
Helix 7
7
A
135 140Right-handed 310
Helix 8
8
A
166 181Right-handed alpha
Helix 9
9
A
184 190Right-handed alpha
Helix 10
10
A
245 263Right-handed alpha
Helix 11
11
A
291 294Right-handed 310
Helix 12
12
A
295 306Right-handed alpha
Helix 13
13
A
308 319Right-handed alpha
Helix 14
14
A
322 326Right-handed 310
Helix 15
15
A
354 360Right-handed alpha
Helix 16
16
A
396 411Right-handed alpha
Helix 17
17
B
18 27Right-handed alpha
Helix 18
18
B
59 74Right-handed alpha
Helix 19
19
B
83 85Right-handed 310
Helix 20
20
B
86 97Right-handed alpha
Helix 21
21
B
103 112Right-handed alpha
Helix 22
22
B
112 123Right-handed alpha
Helix 23
23
B
166 176Right-handed alpha
Helix 24
24
B
245 263Right-handed alpha
Helix 25
25
B
291 294Right-handed 310
Helix 26
26
B
295 306Right-handed alpha
Helix 27
27
B
308 319Right-handed alpha
Helix 28
28
B
322 326Right-handed 310
Helix 29
29
B
354 359Right-handed alpha
Helix 30
30
B
396 411Right-handed alpha
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There are 10 sheets in PDB entry 3VOT. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 54first strand
Strand 2
A
30 36parallel
Strand 3
A
7 11parallel
Strand 4
A
78 80parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 133first strand
Strand 2
A
195 199anti-parallel
Strand 3
A
148 152anti-parallel
Strand 4
A
162 164anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
216 226first strand
Strand 2
A
205 213anti-parallel
Strand 3
A
268 276anti-parallel
Strand 4
A
282 288anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
237 240first strand
Strand 2
A
335 340anti-parallel
Strand 3
A
388 394anti-parallel
Strand 4
A
364 369anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
376 377first strand
Strand 2
A
347 353anti-parallel
Strand 3
A
412 415anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
48 54first strand
Strand 2
B
30 36parallel
Strand 3
B
7 11parallel
Strand 4
B
78 80parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
130 133first strand
Strand 2
B
195 199anti-parallel
Strand 3
B
148 152anti-parallel
Strand 4
B
162 164anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
216 226first strand
Strand 2
B
205 213anti-parallel
Strand 3
B
268 276anti-parallel
Strand 4
B
282 288anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
238 240first strand
Strand 2
B
335 340anti-parallel
Strand 3
B
388 394anti-parallel
Strand 4
B
364 369anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
376 377first strand
Strand 2
B
347 353anti-parallel
Strand 3
B
412 415anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il