Analysis of interatomic Contacts of Structural Units in PDB entry:
3VOV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VOV entry

There are 4 chains in PDB entry 3VOV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 300
B
 MET 1GLY 300
C
 MET 1LYS 298
D
 MET 1ASP 299
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 3VOV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
35 55Right-handed alpha
Helix 2
2
A
89 99Right-handed alpha
Helix 3
3
A
107 119Right-handed alpha
Helix 4
4
A
156 160Right-handed 310
Helix 5
5
A
176 182Right-handed alpha
Helix 6
6
A
182 195Right-handed alpha
Helix 7
7
A
199 209Right-handed alpha
Helix 8
8
A
211 237Right-handed alpha
Helix 9
9
A
245 250Right-handed alpha
Helix 10
10
A
252 266Right-handed alpha
Helix 11
11
A
280 282Right-handed 310
Helix 12
12
A
283 300Right-handed alpha
Helix 13
13
B
35 55Right-handed alpha
Helix 14
14
B
89 99Right-handed alpha
Helix 15
15
B
107 119Right-handed alpha
Helix 16
16
B
156 160Right-handed 310
Helix 17
17
B
176 182Right-handed alpha
Helix 18
18
B
182 195Right-handed alpha
Helix 19
19
B
199 209Right-handed alpha
Helix 20
20
B
211 237Right-handed alpha
Helix 21
21
B
245 250Right-handed alpha
Helix 22
22
B
252 266Right-handed alpha
Helix 23
23
B
280 282Right-handed 310
Helix 24
24
B
283 300Right-handed alpha
Helix 25
25
C
35 55Right-handed alpha
Helix 26
26
C
89 99Right-handed alpha
Helix 27
27
C
107 118Right-handed alpha
Helix 28
28
C
156 160Right-handed 310
Helix 29
29
C
176 182Right-handed alpha
Helix 30
30
C
182 195Right-handed alpha
Helix 31
31
C
199 209Right-handed alpha
Helix 32
32
C
211 237Right-handed alpha
Helix 33
33
C
245 250Right-handed alpha
Helix 34
34
C
252 266Right-handed alpha
Helix 35
35
C
280 282Right-handed 310
Helix 36
36
C
283 298Right-handed alpha
Helix 37
37
D
35 55Right-handed alpha
Helix 38
38
D
89 99Right-handed alpha
Helix 39
39
D
107 119Right-handed alpha
Helix 40
40
D
156 160Right-handed 310
Helix 41
41
D
176 182Right-handed alpha
Helix 42
42
D
182 195Right-handed alpha
Helix 43
43
D
199 209Right-handed alpha
Helix 44
44
D
211 237Right-handed alpha
Helix 45
45
D
245 250Right-handed alpha
Helix 46
46
D
254 266Right-handed alpha
Helix 47
47
D
280 282Right-handed 310
Helix 48
48
D
283 298Right-handed alpha
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There are 11 sheets in PDB entry 3VOV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 30first strand
Strand 2
A
12 18anti-parallel
Strand 3
A
3 8anti-parallel
Strand 4
A
61 65parallel
Strand 5
A
102 106parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 70first strand
Strand 2
A
75 76anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
145 146first strand
Strand 2
A
136 142anti-parallel
Strand 3
A
127 132anti-parallel
Strand 4
A
240 244parallel
Strand 5
A
275 277parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
27 30first strand
Strand 2
B
12 18anti-parallel
Strand 3
B
3 8anti-parallel
Strand 4
B
61 65parallel
Strand 5
B
102 106parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
69 70first strand
Strand 2
B
75 76anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
145 146first strand
Strand 2
B
136 142anti-parallel
Strand 3
B
127 132anti-parallel
Strand 4
B
240 244parallel
Strand 5
B
275 277parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
27 30first strand
Strand 2
C
12 18anti-parallel
Strand 3
C
3 8anti-parallel
Strand 4
C
61 65parallel
Strand 5
C
102 106parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
145 146first strand
Strand 2
C
136 142anti-parallel
Strand 3
C
127 132anti-parallel
Strand 4
C
240 244parallel
Strand 5
C
275 277parallel
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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
27 30first strand
Strand 2
D
12 18anti-parallel
Strand 3
D
3 8anti-parallel
Strand 4
D
61 65parallel
Strand 5
D
102 106parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
69 70first strand
Strand 2
D
75 76anti-parallel
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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
145 146first strand
Strand 2
D
136 142anti-parallel
Strand 3
D
127 132anti-parallel
Strand 4
D
240 244parallel
Strand 5
D
275 277parallel
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