Analysis of interatomic Contacts of Structural Units in PDB entry:
3VP6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VP6 entry

There are 4 chains in PDB entry 3VP6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 93HIS 404
A
 MET 406GLN 592
B
 PHE 95HIS 404
B
 MET 406LEU 590
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 3VP6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
99 103Right-handed 310
Helix 2
2
A
109 132Right-handed alpha
Helix 3
3
A
143 150Right-handed alpha
Helix 4
4
A
164 178Right-handed alpha
Helix 5
5
A
196 210Right-handed alpha
Helix 6
6
A
219 238Right-handed alpha
Helix 7
7
A
251 268Right-handed alpha
Helix 8
8
A
269 275Right-handed alpha
Helix 9
9
A
276 279Right-handed 310
Helix 10
10
A
292 301Right-handed alpha
Helix 11
11
A
304 306Right-handed 310
Helix 12
12
A
320 334Right-handed alpha
Helix 13
13
A
355 367Right-handed alpha
Helix 14
14
A
376 383Right-handed 310
Helix 15
15
A
386 391Right-handed 310
Helix 16
16
A
392 396Right-handed 310
Helix 17
17
A
422 429Right-handed alpha
Helix 18
18
A
443 447Right-handed 310
Helix 19
19
A
448 452Right-handed 310
Helix 20
20
A
460 496Right-handed alpha
Helix 21
21
A
519 523Right-handed 310
Helix 22
22
A
528 550Right-handed alpha
Helix 23
23
A
576 592Right-handed alpha
Helix 24
24
B
99 103Right-handed 310
Helix 25
25
B
109 132Right-handed alpha
Helix 26
26
B
143 149Right-handed alpha
Helix 27
27
B
164 179Right-handed alpha
Helix 28
28
B
196 210Right-handed alpha
Helix 29
29
B
219 238Right-handed alpha
Helix 30
30
B
251 268Right-handed alpha
Helix 31
31
B
269 275Right-handed alpha
Helix 32
32
B
276 279Right-handed 310
Helix 33
33
B
292 301Right-handed alpha
Helix 34
34
B
304 306Right-handed 310
Helix 35
35
B
320 334Right-handed alpha
Helix 36
36
B
355 367Right-handed alpha
Helix 37
37
B
376 383Right-handed 310
Helix 38
38
B
386 391Right-handed 310
Helix 39
39
B
392 396Right-handed 310
Helix 40
40
B
422 429Right-handed alpha
Helix 41
41
B
443 447Right-handed 310
Helix 42
42
B
460 495Right-handed alpha
Helix 43
43
B
528 537Right-handed alpha
Helix 44
44
B
537 550Right-handed alpha
Helix 45
45
B
576 590Right-handed alpha
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There are 4 sheets in PDB entry 3VP6. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 188first strand
Strand 2
A
553 559parallel
Strand 3
A
562 568anti-parallel
Strand 4
A
513 517anti-parallel
Strand 5
A
500 502anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
245 249first strand
Strand 2
A
414 418anti-parallel
Strand 3
A
398 401anti-parallel
Strand 4
A
369 374parallel
Strand 5
A
337 344parallel
Strand 6
A
282 287parallel
Strand 7
A
308 311parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
187 188first strand
Strand 2
B
553 559parallel
Strand 3
B
562 568anti-parallel
Strand 4
B
513 517anti-parallel
Strand 5
B
500 502anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
245 249first strand
Strand 2
B
414 418anti-parallel
Strand 3
B
398 401anti-parallel
Strand 4
B
369 374parallel
Strand 5
B
337 344parallel
Strand 6
B
282 287parallel
Strand 7
B
308 311parallel
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