Analysis of interatomic Contacts of Structural Units in PDB entry:
3VPL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VPL entry

There is 1 chain in PDB entry 3VPL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 1TYR 324
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 3VPL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
18 30Right-handed alpha
Helix 2
2
A
60 68Right-handed alpha
Helix 3
3
A
82 88Right-handed alpha
Helix 4
4
A
91 105Right-handed alpha
Helix 5
5
A
119 123Right-handed 310
Helix 6
6
A
125 143Right-handed alpha
Helix 7
7
A
166 170Right-handed 310
Helix 8
8
A
172 176Right-handed 310
Helix 9
9
A
185 190Right-handed 310
Helix 10
10
A
191 205Right-handed alpha
Helix 11
11
A
239 247Right-handed alpha
Helix 12
12
A
247 258Right-handed alpha
Helix 13
13
A
271 279Right-handed 310
Helix 14
14
A
291 294Right-handed 310
Helix 15
15
A
295 307Right-handed alpha
Helix 16
16
A
317 322Right-handed alpha
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There are 2 sheets in PDB entry 3VPL. Click on sheet of interest to get list of strands forming it: A, B,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
311 312first strand
Strand 2
A
11 16parallel
Strand 3
A
262 268parallel
Strand 4
A
208 213parallel
Strand 5
A
178 183parallel
Strand 6
A
149 154parallel
Strand 7
A
109 113parallel
Strand 8
A
72 78parallel
Strand 9
A
35 41parallel
Strand 10
A
11 16parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
236 237first strand
Strand 2
A
224 225anti-parallel
Strand 3
A
218 219anti-parallel
Strand 4
A
288 289parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il