Analysis of interatomic Contacts of Structural Units in PDB entry:
3VPS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VPS entry

There are 2 chains in PDB entry 3VPS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 7ASP 309
B
 HIS 8ILE 310
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 3VPS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 30Right-handed alpha
Helix 2
2
A
58 62Right-handed 310
Helix 3
3
A
63 68Right-handed alpha
Helix 4
4
A
81 86Right-handed alpha
Helix 5
5
A
92 110Right-handed alpha
Helix 6
6
A
121 124Right-handed 310
Helix 7
7
A
141 160Right-handed alpha
Helix 8
8
A
183 196Right-handed alpha
Helix 9
9
A
213 223Right-handed alpha
Helix 10
10
A
224 226Right-handed 310
Helix 11
11
A
242 251Right-handed alpha
Helix 12
12
A
275 283Right-handed alpha
Helix 13
13
A
290 304Right-handed alpha
Helix 14
14
B
17 30Right-handed alpha
Helix 15
15
B
58 62Right-handed 310
Helix 16
16
B
63 67Right-handed 310
Helix 17
17
B
81 86Right-handed alpha
Helix 18
18
B
87 91Right-handed 310
Helix 19
19
B
92 110Right-handed alpha
Helix 20
20
B
121 124Right-handed 310
Helix 21
21
B
141 160Right-handed alpha
Helix 22
22
B
183 196Right-handed alpha
Helix 23
23
B
213 224Right-handed alpha
Helix 24
24
B
242 251Right-handed alpha
Helix 25
25
B
275 283Right-handed alpha
Helix 26
26
B
290 304Right-handed alpha
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There are 8 sheets in PDB entry 3VPS. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 55first strand
Strand 2
A
34 37parallel
Strand 3
A
9 13parallel
Strand 4
A
70 75parallel
Strand 5
A
113 119parallel
Strand 6
A
165 171parallel
Strand 7
A
231 234parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
173 175first strand
Strand 2
A
210 212parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
197 201first strand
Strand 2
A
257 261parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
207 208first strand
Strand 2
A
240 241anti-parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 55first strand
Strand 2
B
34 37parallel
Strand 3
B
9 13parallel
Strand 4
B
70 75parallel
Strand 5
B
113 119parallel
Strand 6
B
165 171parallel
Strand 7
B
231 234parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
173 175first strand
Strand 2
B
210 212parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
197 201first strand
Strand 2
B
257 261parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
207 208first strand
Strand 2
B
240 241anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il