Analysis of interatomic Contacts of Structural Units in PDB entry:
3VPZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VPZ entry

There is 1 chain in PDB entry 3VPZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 7SER 328
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 3VPZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
47 49Right-handed 310
Helix 2
2
A
51 62Right-handed alpha
Helix 3
3
A
95 102Right-handed alpha
Helix 4
4
A
112 120Right-handed alpha
Helix 5
5
A
121 123Right-handed 310
Helix 6
6
A
124 128Right-handed 310
Helix 7
7
A
169 173Right-handed 310
Helix 8
8
A
179 193Right-handed alpha
Helix 9
9
A
197 202Right-handed alpha
Helix 10
10
A
203 218Right-handed alpha
Helix 11
11
A
226 236Right-handed alpha
Helix 12
12
A
239 264Right-handed alpha
Helix 13
13
A
276 279Right-handed 310
Helix 14
14
A
280 287Right-handed alpha
Helix 15
15
A
288 294Right-handed alpha
Helix 16
16
A
296 298Right-handed 310
Helix 17
17
A
299 306Right-handed alpha
Helix 18
18
A
315 327Right-handed alpha
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There are 3 sheets in PDB entry 3VPZ. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 45first strand
Strand 2
A
20 30anti-parallel
Strand 3
A
11 16anti-parallel
Strand 4
A
70 75parallel
Strand 5
A
106 111parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 86first strand
Strand 2
A
91 94anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
129 132first strand
Strand 2
A
308 310anti-parallel
Strand 3
A
270 272parallel
Strand 4
A
142 147parallel
Strand 5
A
151 158anti-parallel
Strand 6
A
163 167anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il