Analysis of interatomic Contacts of Structural Units in PDB entry:
3VQ1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VQ1 entry

There are 3 chains in PDB entry 3VQ1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 27CYS 625
C
 GLN 21HIS 155
B
 PRO 27CYS 549
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 3VQ1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
167 172Right-handed 310
Helix 2
2
A
194 200Right-handed alpha
Helix 3
3
A
238 247Right-handed alpha
Helix 4
4
A
248 250Right-handed 310
Helix 5
5
A
272 281Right-handed 310
Helix 6
6
A
296 300Right-handed 310
Helix 7
7
A
302 306Right-handed 310
Helix 8
8
A
390 395Right-handed alpha
Helix 9
9
A
536 538Right-handed 310
Helix 10
10
A
560 564Right-handed 310
Helix 11
11
A
581 583Right-handed 310
Helix 12
12
A
584 594Right-handed alpha
Helix 13
13
A
600 604Right-handed 310
Helix 14
14
C
102 107Right-handed 310
Helix 15
15
B
167 172Right-handed 310
Helix 16
16
B
194 199Right-handed alpha
Helix 17
17
B
238 248Right-handed alpha
Helix 18
18
B
272 282Right-handed 310
Helix 19
19
B
296 300Right-handed 310
Helix 20
20
B
302 306Right-handed 310
Helix 21
21
B
390 395Right-handed alpha
Helix 22
22
B
536 539Right-handed 310
Helix 23
23
B
560 564Right-handed 310
Helix 24
24
B
581 583Right-handed 310
Helix 25
25
B
584 594Right-handed alpha
Helix 26
26
D
102 107Right-handed 310
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There are 20 sheets in PDB entry 3VQ1. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T,

There are 25 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 32first strand
Strand 2
A
36 38anti-parallel
Strand 3
A
57 59parallel
Strand 4
A
81 83parallel
Strand 5
A
105 107parallel
Strand 6
A
129 131parallel
Strand 7
A
153 155parallel
Strand 8
A
178 180parallel
Strand 9
A
206 208parallel
Strand 10
A
226 233parallel
Strand 11
A
253 260parallel
Strand 12
A
283 289parallel
Strand 13
A
310 314parallel
Strand 14
A
332 336parallel
Strand 15
A
353 357parallel
Strand 16
A
375 377parallel
Strand 17
A
401 403parallel
Strand 18
A
424 426parallel
Strand 19
A
449 451parallel
Strand 20
A
473 475parallel
Strand 21
A
498 500parallel
Strand 22
A
522 524parallel
Strand 23
A
546 548parallel
Strand 24
A
570 572parallel
Strand 25
A
598 599parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 68first strand
Strand 2
A
91 92parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
188 189first strand
Strand 2
A
216 217parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
385 388first strand
Strand 2
A
409 412parallel
Strand 3
A
431 433parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
458 459first strand
Strand 2
A
480 481parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
485 486first strand
Strand 2
A
508 509parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
533 534first strand
Strand 2
A
557 558parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
23 27first strand
Strand 2
C
30 36anti-parallel
Strand 3
C
144 155anti-parallel
Strand 4
C
129 139anti-parallel
Strand 5
C
74 82anti-parallel
Strand 6
C
85 86anti-parallel
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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
23 27first strand
Strand 2
C
30 36anti-parallel
Strand 3
C
144 155anti-parallel
Strand 4
C
129 139anti-parallel
Strand 5
C
74 82anti-parallel
Strand 6
C
90 93anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
44 49first strand
Strand 2
C
57 65anti-parallel
Strand 3
C
113 121anti-parallel
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There are 24 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
29 32first strand
Strand 2
B
36 38anti-parallel
Strand 3
B
57 59parallel
Strand 4
B
81 83parallel
Strand 5
B
105 107parallel
Strand 6
B
129 131parallel
Strand 7
B
153 155parallel
Strand 8
B
178 180parallel
Strand 9
B
206 208parallel
Strand 10
B
225 233parallel
Strand 11
B
252 260parallel
Strand 12
B
283 289parallel
Strand 13
B
310 314parallel
Strand 14
B
332 336parallel
Strand 15
B
353 357parallel
Strand 16
B
375 377parallel
Strand 17
B
401 403parallel
Strand 18
B
424 426parallel
Strand 19
B
449 451parallel
Strand 20
B
473 475parallel
Strand 21
B
498 500parallel
Strand 22
B
522 524parallel
Strand 23
B
546 548parallel
Strand 24
B
570 572parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
67 68first strand
Strand 2
B
91 92parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
188 189first strand
Strand 2
B
216 217parallel
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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
385 388first strand
Strand 2
B
409 412parallel
Strand 3
B
431 433parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
458 459first strand
Strand 2
B
480 481parallel
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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
485 486first strand
Strand 2
B
508 509parallel
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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
533 534first strand
Strand 2
B
557 558parallel
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There are 6 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
23 27first strand
Strand 2
D
30 36anti-parallel
Strand 3
D
144 155anti-parallel
Strand 4
D
129 139anti-parallel
Strand 5
D
74 82anti-parallel
Strand 6
D
85 86anti-parallel
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There are 6 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
23 27first strand
Strand 2
D
30 36anti-parallel
Strand 3
D
144 155anti-parallel
Strand 4
D
129 139anti-parallel
Strand 5
D
74 82anti-parallel
Strand 6
D
90 93anti-parallel
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There are 3 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
44 49first strand
Strand 2
D
57 65anti-parallel
Strand 3
D
113 121anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il