Analysis of interatomic Contacts of Structural Units in PDB entry:
3VQB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VQB entry

There are 2 chains in PDB entry 3VQB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 57ILE 208
B
 SER 57GLN 209
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 3VQB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
93 108Right-handed alpha
Helix 2
2
A
118 123Right-handed alpha
Helix 3
3
A
123 134Right-handed alpha
Helix 4
4
A
154 166Right-handed alpha
Helix 5
5
A
167 169Right-handed 310
Helix 6
6
A
171 186Right-handed alpha
Helix 7
7
A
196 205Right-handed alpha
Helix 8
8
B
93 108Right-handed alpha
Helix 9
9
B
123 134Right-handed alpha
Helix 10
10
B
153 166Right-handed alpha
Helix 11
11
B
167 169Right-handed 310
Helix 12
12
B
171 186Right-handed alpha
Helix 13
13
B
196 209Right-handed alpha
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There are 4 sheets in PDB entry 3VQB. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 89first strand
Strand 2
A
71 78anti-parallel
Strand 3
A
60 68anti-parallel
Strand 4
A
112 115parallel
Strand 5
A
136 139parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 188first strand
Strand 2
A
194 195anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
84 89first strand
Strand 2
B
71 78anti-parallel
Strand 3
B
60 68anti-parallel
Strand 4
B
112 114parallel
Strand 5
B
136 138parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
187 188first strand
Strand 2
B
194 195anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il