Analysis of interatomic Contacts of Structural Units in PDB entry:
3VQI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VQI entry

There are 5 chains in PDB entry 3VQI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 271
B
 MET 1LYS 271
C
 MET 1THR 270
D
 MET 1LYS 271
E
 MET 1LYS 271
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 59 helices in PDB entry 3VQI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 10Right-handed alpha
Helix 2
2
A
30 32Right-handed 310
Helix 3
3
A
44 57Right-handed alpha
Helix 4
4
A
58 60Right-handed 310
Helix 5
5
A
85 94Right-handed alpha
Helix 6
6
A
131 153Right-handed alpha
Helix 7
7
A
162 176Right-handed alpha
Helix 8
8
A
177 187Right-handed alpha
Helix 9
9
A
190 194Right-handed 310
Helix 10
10
A
221 228Right-handed alpha
Helix 11
11
A
251 260Right-handed alpha
Helix 12
12
B
2 10Right-handed alpha
Helix 13
13
B
29 33Right-handed alpha
Helix 14
14
B
44 47Right-handed 310
Helix 15
15
B
48 57Right-handed alpha
Helix 16
16
B
58 60Right-handed 310
Helix 17
17
B
85 94Right-handed alpha
Helix 18
18
B
131 153Right-handed alpha
Helix 19
19
B
155 161Right-handed alpha
Helix 20
20
B
162 176Right-handed alpha
Helix 21
21
B
177 189Right-handed alpha
Helix 22
22
B
190 194Right-handed 310
Helix 23
23
B
221 228Right-handed alpha
Helix 24
24
B
251 260Right-handed alpha
Helix 25
25
C
3 10Right-handed alpha
Helix 26
26
C
44 57Right-handed alpha
Helix 27
27
C
58 60Right-handed 310
Helix 28
28
C
85 94Right-handed alpha
Helix 29
29
C
131 151Right-handed alpha
Helix 30
30
C
162 175Right-handed alpha
Helix 31
31
C
178 184Right-handed alpha
Helix 32
32
C
221 229Right-handed alpha
Helix 33
33
C
251 260Right-handed alpha
Helix 34
34
D
2 10Right-handed alpha
Helix 35
35
D
30 32Right-handed 310
Helix 36
36
D
44 47Right-handed 310
Helix 37
37
D
48 56Right-handed alpha
Helix 38
38
D
57 60Right-handed 310
Helix 39
39
D
85 94Right-handed alpha
Helix 40
40
D
131 152Right-handed alpha
Helix 41
41
D
155 161Right-handed alpha
Helix 42
42
D
162 176Right-handed alpha
Helix 43
43
D
177 189Right-handed alpha
Helix 44
44
D
190 194Right-handed 310
Helix 45
45
D
221 229Right-handed alpha
Helix 46
46
D
251 260Right-handed alpha
Helix 47
47
E
3 10Right-handed alpha
Helix 48
48
E
30 32Right-handed 310
Helix 49
49
E
44 47Right-handed 310
Helix 50
50
E
48 57Right-handed alpha
Helix 51
51
E
58 60Right-handed 310
Helix 52
52
E
85 94Right-handed alpha
Helix 53
53
E
132 153Right-handed alpha
Helix 54
54
E
155 161Right-handed alpha
Helix 55
55
E
162 176Right-handed alpha
Helix 56
56
E
177 189Right-handed alpha
Helix 57
57
E
190 194Right-handed 310
Helix 58
58
E
221 229Right-handed alpha
Helix 59
59
E
251 260Right-handed alpha
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There are 17 sheets in PDB entry 3VQI. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 40first strand
Strand 2
A
12 19anti-parallel
Strand 3
A
111 118parallel
Strand 4
A
71 75anti-parallel
Strand 5
A
78 79anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
208 209first strand
Strand 2
A
199 202anti-parallel
Strand 3
A
266 269parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
238 241first strand
Strand 2
A
244 247anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
34 40first strand
Strand 2
B
12 19anti-parallel
Strand 3
B
112 118parallel
Strand 4
B
71 75anti-parallel
Strand 5
B
78 79anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
208 209first strand
Strand 2
B
199 202anti-parallel
Strand 3
B
266 269parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
238 241first strand
Strand 2
B
244 247anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
34 40first strand
Strand 2
C
12 19anti-parallel
Strand 3
C
112 118parallel
Strand 4
C
71 75anti-parallel
Strand 5
C
78 79anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
208 209first strand
Strand 2
C
196 202anti-parallel
Strand 3
C
212 214anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
208 209first strand
Strand 2
C
196 202anti-parallel
Strand 3
C
266 269parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
238 241first strand
Strand 2
C
244 247anti-parallel
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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
34 40first strand
Strand 2
D
12 19anti-parallel
Strand 3
D
112 118parallel
Strand 4
D
71 75anti-parallel
Strand 5
D
78 79anti-parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
208 209first strand
Strand 2
D
196 202anti-parallel
Strand 3
D
212 214anti-parallel
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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
208 209first strand
Strand 2
D
196 202anti-parallel
Strand 3
D
266 269parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
238 241first strand
Strand 2
D
244 247anti-parallel
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There are 5 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
34 40first strand
Strand 2
E
12 19anti-parallel
Strand 3
E
112 118parallel
Strand 4
E
71 75anti-parallel
Strand 5
E
78 79anti-parallel
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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
196 197first strand
Strand 2
E
213 214anti-parallel
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There are 5 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
208 209first strand
Strand 2
E
199 202anti-parallel
Strand 3
E
266 270parallel
Strand 4
E
238 241anti-parallel
Strand 5
E
244 247anti-parallel
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