Analysis of interatomic Contacts of Structural Units in PDB entry:
3VQM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VQM entry

There are 23 chains in PDB entry 3VQM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 5ALA 115
B
 ARG 11ALA 115
C
 GLU 13ALA 115
D
 LYS 6ALA 115
E
 LYS 6ILE 114
F
 GLU 14ILE 114
G
 LEU 4ALA 115
H
 GLU 14ALA 115
I
 ARG 11ALA 115
J
 LEU 4ALA 115
K
 LEU 8ALA 115
L
 GLU 14ARG 111
M
 LEU 8ALA 115
N
 GLU 13ARG 111
O
 VAL 119GLU 123
P
 VAL 119GLU 123
Q
 VAL 119GLU 123
R
 VAL 119GLU 123
S
 VAL 119GLU 123
T
 VAL 119GLU 123
U
 VAL 119GLU 123
V
 VAL 119GLU 123
W
 VAL 119GLU 123
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 3VQM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 15Right-handed 310
Helix 2
2
A
16 24Right-handed alpha
Helix 3
3
B
16 22Right-handed alpha
Helix 4
4
B
46 48Right-handed 310
Helix 5
5
C
16 21Right-handed alpha
Helix 6
6
D
16 22Right-handed alpha
Helix 7
7
D
46 48Right-handed 310
Helix 8
8
E
16 24Right-handed alpha
Helix 9
9
E
46 48Right-handed 310
Helix 10
10
F
19 23Right-handed 310
Helix 11
11
F
46 48Right-handed 310
Helix 12
12
G
4 9Right-handed 310
Helix 13
13
G
16 24Right-handed alpha
Helix 14
14
G
46 48Right-handed 310
Helix 15
15
H
16 21Right-handed alpha
Helix 16
16
H
46 48Right-handed 310
Helix 17
17
I
16 22Right-handed alpha
Helix 18
18
I
46 48Right-handed 310
Helix 19
19
J
16 24Right-handed alpha
Helix 20
20
J
46 48Right-handed 310
Helix 21
21
K
18 22Right-handed 310
Helix 22
22
K
46 48Right-handed 310
Helix 23
23
L
16 22Right-handed alpha
Helix 24
24
M
16 24Right-handed alpha
Helix 25
25
N
16 22Right-handed alpha
Helix 26
26
N
46 48Right-handed 310
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There are 28 sheets in PDB entry 3VQM. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
73 77first strand
Strand 2
A
27 32anti-parallel
Strand 3
A
35 41anti-parallel
Strand 4
A
107 113anti-parallel
Strand 5
A
100 104anti-parallel
Strand 6
O
122 123parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 55first strand
Strand 2
A
59 65anti-parallel
Strand 3
A
82 88anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 77first strand
Strand 2
B
27 32anti-parallel
Strand 3
B
35 41anti-parallel
Strand 4
B
107 113anti-parallel
Strand 5
B
100 104anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 55first strand
Strand 2
B
59 65anti-parallel
Strand 3
B
82 88anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
73 77first strand
Strand 2
C
27 32anti-parallel
Strand 3
C
35 41anti-parallel
Strand 4
C
107 113anti-parallel
Strand 5
C
100 104anti-parallel
Strand 6
Q
121 122parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
51 55first strand
Strand 2
C
59 65anti-parallel
Strand 3
C
82 88anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
74 76first strand
Strand 2
D
27 32anti-parallel
Strand 3
D
35 41anti-parallel
Strand 4
D
107 113anti-parallel
Strand 5
D
100 104anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
50 55first strand
Strand 2
D
59 65anti-parallel
Strand 3
D
82 88anti-parallel
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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
73 77first strand
Strand 2
E
27 32anti-parallel
Strand 3
E
35 41anti-parallel
Strand 4
E
107 113anti-parallel
Strand 5
E
100 104anti-parallel
Strand 6
R
121 123parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
50 54first strand
Strand 2
E
59 65anti-parallel
Strand 3
E
82 88anti-parallel
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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
73 77first strand
Strand 2
F
27 31anti-parallel
Strand 3
F
36 41anti-parallel
Strand 4
F
107 112anti-parallel
Strand 5
F
100 104anti-parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
50 55first strand
Strand 2
F
59 65anti-parallel
Strand 3
F
82 88anti-parallel
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There are 5 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
100 104first strand
Strand 2
G
107 113anti-parallel
Strand 3
G
35 41anti-parallel
Strand 4
G
27 32anti-parallel
Strand 5
H
74 77anti-parallel
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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
50 55first strand
Strand 2
G
59 65anti-parallel
Strand 3
G
82 88anti-parallel
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There are 5 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
74 77first strand
Strand 2
H
27 31anti-parallel
Strand 3
H
35 41anti-parallel
Strand 4
H
107 113anti-parallel
Strand 5
H
100 104anti-parallel
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There are 3 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
50 55first strand
Strand 2
H
59 65anti-parallel
Strand 3
H
82 88anti-parallel
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There are 5 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
100 104first strand
Strand 2
I
107 113anti-parallel
Strand 3
I
35 41anti-parallel
Strand 4
I
27 32anti-parallel
Strand 5
J
73 76anti-parallel
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There are 3 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
50 55first strand
Strand 2
I
59 65anti-parallel
Strand 3
I
82 88anti-parallel
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There are 5 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
73 76first strand
Strand 2
J
27 32anti-parallel
Strand 3
J
35 41anti-parallel
Strand 4
J
107 113anti-parallel
Strand 5
J
100 104anti-parallel
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There are 3 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
50 55first strand
Strand 2
J
59 65anti-parallel
Strand 3
J
82 88anti-parallel
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There are 5 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
100 104first strand
Strand 2
K
107 113anti-parallel
Strand 3
K
35 41anti-parallel
Strand 4
K
27 32anti-parallel
Strand 5
L
73 76anti-parallel
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There are 3 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
50 55first strand
Strand 2
K
59 65anti-parallel
Strand 3
K
82 88anti-parallel
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There are 4 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
27 29first strand
Strand 2
L
38 41anti-parallel
Strand 3
L
107 110anti-parallel
Strand 4
L
101 104anti-parallel
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There are 3 strands in X sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
50 55first strand
Strand 2
L
59 65anti-parallel
Strand 3
L
82 88anti-parallel
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There are 5 strands in Y sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
100 104first strand
Strand 2
M
107 113anti-parallel
Strand 3
M
35 41anti-parallel
Strand 4
M
27 32anti-parallel
Strand 5
N
73 77anti-parallel
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There are 3 strands in Z sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
50 55first strand
Strand 2
M
59 65anti-parallel
Strand 3
M
82 88anti-parallel
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There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
27 31first strand
Strand 2
N
36 41anti-parallel
Strand 3
N
107 111anti-parallel
Strand 4
N
100 104anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
50 55first strand
Strand 2
N
59 65anti-parallel
Strand 3
N
82 88anti-parallel
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