Analysis of interatomic Contacts of Structural Units in PDB entry:
3VQR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VQR entry

There are 2 chains in PDB entry 3VQR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 2LEU 426
B
 PRO 2LEU 426
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 3VQR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 27Right-handed alpha
Helix 2
2
A
42 46Right-handed 310
Helix 3
3
A
57 77Right-handed alpha
Helix 4
4
A
93 105Right-handed alpha
Helix 5
5
A
118 127Right-handed alpha
Helix 6
6
A
135 142Right-handed alpha
Helix 7
7
A
159 175Right-handed alpha
Helix 8
8
A
230 232Right-handed 310
Helix 9
9
A
233 239Right-handed alpha
Helix 10
10
A
240 242Right-handed 310
Helix 11
11
A
261 271Right-handed alpha
Helix 12
12
A
294 296Right-handed 310
Helix 13
13
A
320 328Right-handed alpha
Helix 14
14
A
328 336Right-handed alpha
Helix 15
15
A
337 340Right-handed 310
Helix 16
16
A
379 396Right-handed alpha
Helix 17
17
A
412 415Right-handed 310
Helix 18
18
B
12 27Right-handed alpha
Helix 19
19
B
42 46Right-handed 310
Helix 20
20
B
57 77Right-handed alpha
Helix 21
21
B
93 108Right-handed alpha
Helix 22
22
B
118 127Right-handed alpha
Helix 23
23
B
136 142Right-handed alpha
Helix 24
24
B
159 175Right-handed alpha
Helix 25
25
B
230 232Right-handed 310
Helix 26
26
B
233 239Right-handed alpha
Helix 27
27
B
240 242Right-handed 310
Helix 28
28
B
261 271Right-handed alpha
Helix 29
29
B
294 296Right-handed 310
Helix 30
30
B
320 328Right-handed alpha
Helix 31
31
B
328 336Right-handed alpha
Helix 32
32
B
337 340Right-handed 310
Helix 33
33
B
364 368Right-handed 310
Helix 34
34
B
379 396Right-handed alpha
Helix 35
35
B
412 415Right-handed 310
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There are 10 sheets in PDB entry 3VQR. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
177 179first strand
Strand 2
A
30 33parallel
Strand 3
A
3 9parallel
Strand 4
A
219 228parallel
Strand 5
A
207 214anti-parallel
Strand 6
A
184 191anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
177 179first strand
Strand 2
A
30 33parallel
Strand 3
A
3 9parallel
Strand 4
A
219 228parallel
Strand 5
A
370 374parallel
Strand 6
A
361 363anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 52first strand
Strand 2
A
155 157anti-parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
114 117first strand
Strand 2
A
148 152anti-parallel
Strand 3
A
88 92anti-parallel
Strand 4
A
281 284parallel
Strand 5
A
288 293anti-parallel
Strand 6
A
298 302anti-parallel
Strand 7
A
247 258anti-parallel
Strand 8
A
346 355anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
400 402first strand
Strand 2
A
408 410anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
177 180first strand
Strand 2
B
30 34parallel
Strand 3
B
3 9parallel
Strand 4
B
219 228parallel
Strand 5
B
207 214anti-parallel
Strand 6
B
184 191anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
177 180first strand
Strand 2
B
30 34parallel
Strand 3
B
3 9parallel
Strand 4
B
219 228parallel
Strand 5
B
370 374parallel
Strand 6
B
361 363anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 52first strand
Strand 2
B
155 157anti-parallel
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There are 8 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
114 117first strand
Strand 2
B
148 152anti-parallel
Strand 3
B
88 92anti-parallel
Strand 4
B
281 284parallel
Strand 5
B
288 293anti-parallel
Strand 6
B
298 302anti-parallel
Strand 7
B
247 258anti-parallel
Strand 8
B
346 355anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
400 402first strand
Strand 2
B
408 410anti-parallel
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