Analysis of interatomic Contacts of Structural Units in PDB entry:
3VQS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VQS entry

There are 3 chains in PDB entry 3VQS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1ALA 553
B
 SER 1GLY 557
C
 SER 1GLU 143
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are119 helices in PDB entry 3VQS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
24 31Right-handed alpha
Helix 2
2
A
33 35Right-handed 310
Helix 3
3
A
41 43Right-handed 310
Helix 4
4
A
44 53Right-handed alpha
Helix 5
5
A
61 76Right-handed alpha
Helix 6
6
A
84 91Right-handed alpha
Helix 7
7
A
104 110Right-handed alpha
Helix 8
8
A
112 129Right-handed alpha
Helix 9
9
A
164 188Right-handed alpha
Helix 10
10
A
189 195Right-handed 310
Helix 11
11
A
196 211Right-handed alpha
Helix 12
12
A
223 228Right-handed alpha
Helix 13
13
A
229 241Right-handed alpha
Helix 14
14
A
246 260Right-handed alpha
Helix 15
15
A
286 307Right-handed alpha
Helix 16
16
A
328 346Right-handed alpha
Helix 17
17
A
359 363Right-handed 310
Helix 18
18
A
388 401Right-handed alpha
Helix 19
19
A
406 415Right-handed alpha
Helix 20
20
A
418 424Right-handed alpha
Helix 21
21
A
424 437Right-handed alpha
Helix 22
22
A
455 457Right-handed 310
Helix 23
23
A
458 468Right-handed alpha
Helix 24
24
A
469 473Right-handed 310
Helix 25
25
A
478 493Right-handed alpha
Helix 26
26
A
496 514Right-handed alpha
Helix 27
27
A
515 526Right-handed alpha
Helix 28
28
A
527 530Right-handed 310
Helix 29
29
A
539 543Right-handed 310
Helix 30
30
B
24 29Right-handed alpha
Helix 31
31
B
33 35Right-handed 310
Helix 32
32
B
41 43Right-handed 310
Helix 33
33
B
44 53Right-handed alpha
Helix 34
34
B
61 76Right-handed alpha
Helix 35
35
B
84 91Right-handed alpha
Helix 36
36
B
104 110Right-handed alpha
Helix 37
37
B
112 129Right-handed alpha
Helix 38
38
B
164 188Right-handed alpha
Helix 39
39
B
189 195Right-handed 310
Helix 40
40
B
196 211Right-handed alpha
Helix 41
41
B
223 228Right-handed alpha
Helix 42
42
B
229 242Right-handed alpha
Helix 43
43
B
246 260Right-handed alpha
Helix 44
44
B
286 306Right-handed alpha
Helix 45
45
B
328 346Right-handed alpha
Helix 46
46
B
359 363Right-handed 310
Helix 47
47
B
388 401Right-handed alpha
Helix 48
48
B
406 415Right-handed alpha
Helix 49
49
B
418 424Right-handed alpha
Helix 50
50
B
424 436Right-handed alpha
Helix 51
51
B
455 457Right-handed 310
Helix 52
52
B
458 468Right-handed alpha
Helix 53
53
B
469 473Right-handed 310
Helix 54
54
B
478 493Right-handed alpha
Helix 55
55
B
496 514Right-handed alpha
Helix 56
56
B
515 526Right-handed alpha
Helix 57
57
B
527 530Right-handed 310
Helix 58
58
B
539 544Right-handed alpha
Helix 59
59
B
546 549Right-handed 310
Helix 60
60
C
24 29Right-handed alpha
Helix 61
61
C
33 35Right-handed 310
Helix 62
62
C
41 43Right-handed 310
Helix 63
63
C
44 53Right-handed alpha
Helix 64
64
C
61 76Right-handed alpha
Helix 65
65
C
84 91Right-handed alpha
Helix 66
66
C
104 110Right-handed alpha
Helix 67
67
C
112 129Right-handed alpha
Helix 68
68
C
148 152Right-handed 310
Helix 69
69
C
164 188Right-handed alpha
Helix 70
70
C
189 195Right-handed 310
Helix 71
71
C
196 211Right-handed alpha
Helix 72
72
C
223 228Right-handed alpha
Helix 73
73
C
229 241Right-handed alpha
Helix 74
74
C
246 260Right-handed alpha
Helix 75
75
C
286 306Right-handed alpha
Helix 76
76
C
328 346Right-handed alpha
Helix 77
77
C
359 363Right-handed 310
Helix 78
78
C
388 401Right-handed alpha
Helix 79
79
C
406 415Right-handed alpha
Helix 80
80
C
418 424Right-handed alpha
Helix 81
81
C
424 437Right-handed alpha
Helix 82
82
C
455 457Right-handed 310
Helix 83
83
C
458 468Right-handed alpha
Helix 84
84
C
469 473Right-handed 310
Helix 85
85
C
478 493Right-handed alpha
Helix 86
86
C
496 515Right-handed alpha
Helix 87
87
C
515 526Right-handed alpha
Helix 88
88
C
527 530Right-handed 310
Helix 89
89
C
541 545Right-handed 310
Helix 90
90
C
546 549Right-handed 310
Helix 91
91
D
24 31Right-handed alpha
Helix 92
92
D
33 35Right-handed 310
Helix 93
93
D
41 43Right-handed 310
Helix 94
94
D
44 53Right-handed alpha
Helix 95
95
D
61 76Right-handed alpha
Helix 96
96
D
84 90Right-handed alpha
Helix 97
97
D
104 110Right-handed alpha
Helix 98
98
D
112 129Right-handed alpha
Helix 99
99
D
164 188Right-handed alpha
Helix 100
100
D
189 195Right-handed 310
Helix 101
101
D
196 211Right-handed alpha
Helix 102
102
D
223 228Right-handed alpha
Helix 103
103
D
229 243Right-handed alpha
Helix 104
104
D
246 260Right-handed alpha
Helix 105
105
D
286 306Right-handed alpha
Helix 106
106
D
328 346Right-handed alpha
Helix 107
107
D
359 363Right-handed 310
Helix 108
108
D
388 401Right-handed alpha
Helix 109
109
D
406 415Right-handed alpha
Helix 110
110
D
418 424Right-handed alpha
Helix 111
111
D
424 436Right-handed alpha
Helix 112
112
D
455 457Right-handed 310
Helix 113
113
D
458 468Right-handed alpha
Helix 114
114
D
469 473Right-handed 310
Helix 115
115
D
478 493Right-handed alpha
Helix 116
116
D
496 515Right-handed alpha
Helix 117
117
D
515 526Right-handed alpha
Helix 118
118
D
527 530Right-handed 310
Helix 119
119
D
539 543Right-handed 310
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There are 20 sheets in PDB entry 3VQS. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 6first strand
Strand 2
A
273 277anti-parallel
Strand 3
A
264 267anti-parallel
Strand 4
A
136 140parallel
Strand 5
A
159 162anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 39first strand
Strand 2
A
144 146anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
214 219first strand
Strand 2
A
319 325anti-parallel
Strand 3
A
309 316anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
369 374first strand
Strand 2
A
380 385anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
443 447first strand
Strand 2
A
450 454anti-parallel
Strand 3
A
550 551anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 6first strand
Strand 2
B
273 277anti-parallel
Strand 3
B
264 267anti-parallel
Strand 4
B
136 140parallel
Strand 5
B
159 163anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
37 39first strand
Strand 2
B
144 146anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
214 219first strand
Strand 2
B
319 325anti-parallel
Strand 3
B
309 316anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
369 374first strand
Strand 2
B
380 385anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
443 447first strand
Strand 2
B
450 454anti-parallel
Strand 3
B
551 554anti-parallel
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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
4 6first strand
Strand 2
C
273 277anti-parallel
Strand 3
C
264 267anti-parallel
Strand 4
C
136 140parallel
Strand 5
C
159 162anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
37 39first strand
Strand 2
C
144 146anti-parallel
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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
214 219first strand
Strand 2
C
319 325anti-parallel
Strand 3
C
309 316anti-parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
369 374first strand
Strand 2
C
380 385anti-parallel
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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
443 447first strand
Strand 2
C
450 454anti-parallel
Strand 3
C
551 554anti-parallel
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There are 5 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
4 6first strand
Strand 2
D
273 277anti-parallel
Strand 3
D
264 267anti-parallel
Strand 4
D
136 140parallel
Strand 5
D
159 162anti-parallel
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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
37 39first strand
Strand 2
D
144 146anti-parallel
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There are 3 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
214 219first strand
Strand 2
D
319 325anti-parallel
Strand 3
D
309 316anti-parallel
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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
369 374first strand
Strand 2
D
380 385anti-parallel
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There are 3 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
443 447first strand
Strand 2
D
450 454anti-parallel
Strand 3
D
550 551anti-parallel
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