Analysis of interatomic Contacts of Structural Units in PDB entry:
3VQU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VQU entry

There is 1 chain in PDB entry 3VQU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 516THR 795
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 3VQU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
561 578Right-handed alpha
Helix 2
2
A
579 582Right-handed 310
Helix 3
3
A
609 616Right-handed alpha
Helix 4
4
A
620 641Right-handed alpha
Helix 5
5
A
649 651Right-handed 310
Helix 6
6
A
691 697Right-handed alpha
Helix 7
7
A
713 730Right-handed alpha
Helix 8
8
A
739 749Right-handed alpha
Helix 9
9
A
761 772Right-handed alpha
Helix 10
10
A
781 786Right-handed alpha
Helix 11
11
A
788 793Right-handed alpha
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There are 3 sheets in PDB entry 3VQU. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
517 520first strand
Strand 2
A
523 533anti-parallel
Strand 3
A
537 543anti-parallel
Strand 4
A
549 556anti-parallel
Strand 5
A
597 602anti-parallel
Strand 6
A
588 593anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
517 520first strand
Strand 2
A
523 533anti-parallel
Strand 3
A
672 673anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
607 608first strand
Strand 2
A
653 656anti-parallel
Strand 3
A
659 662anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il