Analysis of interatomic Contacts of Structural Units in PDB entry:
3VQZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VQZ entry

There is 1 chain in PDB entry 3VQZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 3LYS 261
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 3VQZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
47 58Right-handed alpha
Helix 2
2
A
61 63Right-handed 310
Helix 3
3
A
74 79Right-handed alpha
Helix 4
4
A
80 89Right-handed alpha
Helix 5
5
A
98 105Right-handed alpha
Helix 6
6
A
185 188Right-handed 310
Helix 7
7
A
189 205Right-handed alpha
Helix 8
8
A
215 219Right-handed 310
Helix 9
9
A
220 232Right-handed alpha
Helix 10
10
A
233 237Right-handed 310
Helix 11
11
A
240 261Right-handed alpha
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There are 2 sheets in PDB entry 3VQZ. Click on sheet of interest to get list of strands forming it: A, B,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 15first strand
Strand 2
A
18 20anti-parallel
Strand 3
A
29 31anti-parallel
Strand 4
A
37 40anti-parallel
Strand 5
A
65 69parallel
Strand 6
A
91 95parallel
Strand 7
A
126 129parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 137first strand
Strand 2
A
140 146anti-parallel
Strand 3
A
155 163anti-parallel
Strand 4
A
166 173anti-parallel
Strand 5
A
210 213parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il