Analysis of interatomic Contacts of Structural Units in PDB entry:
3VR0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VR0 entry

There are 4 chains in PDB entry 3VR0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 14GLU 257
B
 MET 14GLU 257
C
 MET 14ALA 261
D
 GLY 12GLN 259
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 3VR0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
38 40Right-handed 310
Helix 2
2
A
41 55Right-handed alpha
Helix 3
3
A
75 77Right-handed 310
Helix 4
4
A
112 129Right-handed alpha
Helix 5
5
A
160 170Right-handed alpha
Helix 6
6
A
188 200Right-handed alpha
Helix 7
7
A
217 233Right-handed alpha
Helix 8
8
A
238 257Right-handed alpha
Helix 9
9
B
38 40Right-handed 310
Helix 10
10
B
41 54Right-handed alpha
Helix 11
11
B
75 77Right-handed 310
Helix 12
12
B
112 128Right-handed alpha
Helix 13
13
B
129 131Right-handed 310
Helix 14
14
B
160 170Right-handed alpha
Helix 15
15
B
188 200Right-handed alpha
Helix 16
16
B
217 233Right-handed alpha
Helix 17
17
B
238 256Right-handed alpha
Helix 18
18
C
38 40Right-handed 310
Helix 19
19
C
41 55Right-handed alpha
Helix 20
20
C
75 77Right-handed 310
Helix 21
21
C
112 129Right-handed alpha
Helix 22
22
C
160 170Right-handed alpha
Helix 23
23
C
188 200Right-handed alpha
Helix 24
24
C
217 233Right-handed alpha
Helix 25
25
C
238 254Right-handed alpha
Helix 26
26
D
38 40Right-handed 310
Helix 27
27
D
41 54Right-handed alpha
Helix 28
28
D
75 77Right-handed 310
Helix 29
29
D
112 129Right-handed alpha
Helix 30
30
D
160 170Right-handed alpha
Helix 31
31
D
188 200Right-handed alpha
Helix 32
32
D
217 233Right-handed alpha
Helix 33
33
D
238 258Right-handed alpha
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There are 8 sheets in PDB entry 3VR0. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 21first strand
Strand 2
A
57 63anti-parallel
Strand 3
A
84 89anti-parallel
Strand 4
A
99 104anti-parallel
Strand 5
A
31 34parallel
Strand 6
A
134 142parallel
Strand 7
A
203 211parallel
Strand 8
A
152 156anti-parallel
Strand 9
A
176 178parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 81first strand
Strand 2
A
70 73anti-parallel
Strand 3
B
185 187anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
185 187first strand
Strand 2
D
70 73anti-parallel
Strand 3
D
79 81anti-parallel
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There are 9 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
18 21first strand
Strand 2
B
57 63anti-parallel
Strand 3
B
84 89anti-parallel
Strand 4
B
99 104anti-parallel
Strand 5
B
31 34parallel
Strand 6
B
134 142parallel
Strand 7
B
203 211parallel
Strand 8
B
152 156anti-parallel
Strand 9
B
176 178parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
79 81first strand
Strand 2
B
70 73anti-parallel
Strand 3
C
185 187anti-parallel
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There are 9 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
18 21first strand
Strand 2
C
57 63anti-parallel
Strand 3
C
84 89anti-parallel
Strand 4
C
99 104anti-parallel
Strand 5
C
31 34parallel
Strand 6
C
134 142parallel
Strand 7
C
203 211parallel
Strand 8
C
152 156anti-parallel
Strand 9
C
176 178parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
79 81first strand
Strand 2
C
70 73anti-parallel
Strand 3
D
185 187anti-parallel
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There are 9 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
18 21first strand
Strand 2
D
57 63anti-parallel
Strand 3
D
84 89anti-parallel
Strand 4
D
99 104anti-parallel
Strand 5
D
31 34parallel
Strand 6
D
134 142parallel
Strand 7
D
203 211parallel
Strand 8
D
152 156anti-parallel
Strand 9
D
176 178parallel
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