Analysis of interatomic Contacts of Structural Units in PDB entry:
3VR5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3VR5 entry

There are 3 chains in PDB entry 3VR5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 0	GLU 587
B	GLY -6	SER 586
C	MSE 1	VAL 222

There are133 helices in PDB entry 3VR5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	90	99	Right-handed alpha
Helix 2	2	A	213	220	Right-handed alpha
Helix 3	3	A	237	249	Right-handed alpha
Helix 4	4	A	262	273	Right-handed alpha
Helix 5	5	A	284	287	Right-handed 310
Helix 6	6	A	299	319	Right-handed alpha
Helix 7	7	A	330	345	Right-handed alpha
Helix 8	8	A	350	354	Right-handed 310
Helix 9	9	A	357	367	Right-handed alpha
Helix 10	10	A	399	407	Right-handed alpha
Helix 11	11	A	416	422	Right-handed alpha
Helix 12	12	A	437	450	Right-handed alpha
Helix 13	13	A	452	477	Right-handed alpha
Helix 14	14	A	478	482	Right-handed 310
Helix 15	15	A	483	500	Right-handed alpha
Helix 16	16	A	514	537	Right-handed alpha
Helix 17	17	A	541	549	Right-handed alpha
Helix 18	18	A	549	558	Right-handed alpha
Helix 19	19	A	559	562	Right-handed 310
Helix 20	20	A	567	572	Right-handed alpha
Helix 21	21	A	572	587	Right-handed alpha
Helix 22	22	B	90	99	Right-handed alpha
Helix 23	23	B	213	220	Right-handed alpha
Helix 24	24	B	237	249	Right-handed alpha
Helix 25	25	B	262	273	Right-handed alpha
Helix 26	26	B	284	287	Right-handed 310
Helix 27	27	B	301	320	Right-handed alpha
Helix 28	28	B	330	345	Right-handed alpha
Helix 29	29	B	350	354	Right-handed 310
Helix 30	30	B	357	367	Right-handed alpha
Helix 31	31	B	392	396	Right-handed 310
Helix 32	32	B	399	407	Right-handed alpha
Helix 33	33	B	416	422	Right-handed alpha
Helix 34	34	B	437	450	Right-handed alpha
Helix 35	35	B	452	478	Right-handed alpha
Helix 36	36	B	479	482	Right-handed 310
Helix 37	37	B	483	500	Right-handed alpha
Helix 38	38	B	514	538	Right-handed alpha
Helix 39	39	B	541	548	Right-handed alpha
Helix 40	40	B	549	557	Right-handed alpha
Helix 41	41	B	558	562	Right-handed 310
Helix 42	42	B	563	566	Right-handed 310
Helix 43	43	B	567	572	Right-handed alpha
Helix 44	44	B	572	586	Right-handed alpha
Helix 45	45	C	90	99	Right-handed alpha
Helix 46	46	C	213	220	Right-handed alpha
Helix 47	47	C	237	249	Right-handed alpha
Helix 48	48	C	262	273	Right-handed alpha
Helix 49	49	C	274	276	Right-handed 310
Helix 50	50	C	284	287	Right-handed 310
Helix 51	51	C	301	319	Right-handed alpha
Helix 52	52	C	330	345	Right-handed alpha
Helix 53	53	C	350	354	Right-handed 310
Helix 54	54	C	357	367	Right-handed alpha
Helix 55	55	C	392	396	Right-handed 310
Helix 56	56	C	399	407	Right-handed alpha
Helix 57	57	C	416	422	Right-handed alpha
Helix 58	58	C	437	450	Right-handed alpha
Helix 59	59	C	454	476	Right-handed alpha
Helix 60	60	C	483	500	Right-handed alpha
Helix 61	61	C	514	534	Right-handed alpha
Helix 62	62	C	543	548	Right-handed alpha
Helix 63	63	C	554	558	Right-handed alpha
Helix 64	64	C	559	562	Right-handed 310
Helix 65	65	C	568	572	Right-handed alpha
Helix 66	66	C	572	579	Right-handed alpha
Helix 67	67	D	82	86	Right-handed 310
Helix 68	68	D	132	137	Right-handed alpha
Helix 69	69	D	156	168	Right-handed alpha
Helix 70	70	D	187	202	Right-handed alpha
Helix 71	71	D	203	205	Right-handed 310
Helix 72	72	D	217	238	Right-handed alpha
Helix 73	73	D	249	264	Right-handed alpha
Helix 74	74	D	269	273	Right-handed 310
Helix 75	75	D	274	275	Right-handed 310
Helix 76	76	D	276	286	Right-handed alpha
Helix 77	77	D	307	310	Right-handed 310
Helix 78	78	D	313	323	Right-handed alpha
Helix 79	79	D	330	336	Right-handed alpha
Helix 80	80	D	351	355	Right-handed 310
Helix 81	81	D	364	390	Right-handed alpha
Helix 82	82	D	395	412	Right-handed alpha
Helix 83	83	D	422	435	Right-handed alpha
Helix 84	84	D	446	454	Right-handed alpha
Helix 85	85	E	82	86	Right-handed 310
Helix 86	86	E	132	137	Right-handed alpha
Helix 87	87	E	156	168	Right-handed alpha
Helix 88	88	E	187	202	Right-handed alpha
Helix 89	89	E	203	205	Right-handed 310
Helix 90	90	E	217	238	Right-handed alpha
Helix 91	91	E	249	264	Right-handed alpha
Helix 92	92	E	269	273	Right-handed 310
Helix 93	93	E	276	286	Right-handed alpha
Helix 94	94	E	307	310	Right-handed 310
Helix 95	95	E	313	323	Right-handed alpha
Helix 96	96	E	330	335	Right-handed alpha
Helix 97	97	E	351	356	Right-handed 310
Helix 98	98	E	364	390	Right-handed alpha
Helix 99	99	E	391	394	Right-handed 310
Helix 100	100	E	395	412	Right-handed alpha
Helix 101	101	E	422	435	Right-handed alpha
Helix 102	102	E	436	437	Right-handed 310
Helix 103	103	E	438	442	Right-handed 310
Helix 104	104	E	446	454	Right-handed alpha
Helix 105	105	F	82	86	Right-handed 310
Helix 106	106	F	132	137	Right-handed alpha
Helix 107	107	F	156	168	Right-handed alpha
Helix 108	108	F	187	202	Right-handed alpha
Helix 109	109	F	203	205	Right-handed 310
Helix 110	110	F	218	222	Right-handed 310
Helix 111	111	F	223	238	Right-handed alpha
Helix 112	112	F	249	264	Right-handed alpha
Helix 113	113	F	269	273	Right-handed 310
Helix 114	114	F	276	286	Right-handed alpha
Helix 115	115	F	307	310	Right-handed 310
Helix 116	116	F	313	323	Right-handed alpha
Helix 117	117	F	330	336	Right-handed alpha
Helix 118	118	F	364	390	Right-handed alpha
Helix 119	119	F	396	412	Right-handed alpha
Helix 120	120	F	422	435	Right-handed alpha
Helix 121	121	F	436	437	Right-handed 310
Helix 122	122	F	438	442	Right-handed 310
Helix 123	123	F	446	453	Right-handed alpha
Helix 124	124	G	8	67	Right-handed alpha
Helix 125	125	G	77	81	Right-handed alpha
Helix 126	126	G	133	173	Right-handed alpha
Helix 127	127	G	173	206	Right-handed alpha
Helix 128	128	H	10	15	Right-handed alpha
Helix 129	129	H	16	21	Right-handed 310
Helix 130	130	H	30	43	Right-handed alpha
Helix 131	131	H	52	56	Right-handed alpha
Helix 132	132	H	58	66	Right-handed alpha
Helix 133	133	H	84	98	Right-handed alpha

There are 33 sheets in PDB entry 3VR5. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG,

There are 27 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	69	72	first strand
Strand 2	D	29	40	anti-parallel
Strand 3	D	39	55	anti-parallel
Strand 4	D	52	63	anti-parallel
Strand 5	D	15	18	anti-parallel
Strand 6	D	8	12	anti-parallel
Strand 7	C	35	43	anti-parallel
Strand 8	C	26	30	anti-parallel
Strand 9	C	63	70	anti-parallel
Strand 10	C	11	10	anti-parallel
Strand 11	C	13	17	anti-parallel
Strand 12	C	46	51	anti-parallel
Strand 13	C	35	43	anti-parallel
Strand 14	C	26	30	anti-parallel
Strand 15	C	63	70	anti-parallel
Strand 16	C	11	10	anti-parallel
Strand 17	F	39	55	anti-parallel
Strand 18	F	51	63	anti-parallel
Strand 19	F	15	18	anti-parallel
Strand 20	F	8	12	anti-parallel
Strand 21	B	35	43	anti-parallel
Strand 22	B	26	30	anti-parallel
Strand 23	B	63	70	anti-parallel
Strand 24	B	11	10	anti-parallel
Strand 25	E	39	55	anti-parallel
Strand 26	E	29	40	anti-parallel
Strand 27	E	69	72	anti-parallel

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There are 14 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	4	5	first strand
Strand 2	F	69	76	anti-parallel
Strand 3	F	28	40	anti-parallel
Strand 4	F	39	55	anti-parallel
Strand 5	F	51	63	anti-parallel
Strand 6	F	15	18	anti-parallel
Strand 7	F	8	12	anti-parallel
Strand 8	B	35	43	anti-parallel
Strand 9	B	46	51	anti-parallel
Strand 10	B	13	17	anti-parallel
Strand 11	B	11	10	anti-parallel
Strand 12	E	39	55	anti-parallel
Strand 13	E	29	40	anti-parallel
Strand 14	E	69	72	anti-parallel

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There are 13 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	69	72	first strand
Strand 2	E	29	40	anti-parallel
Strand 3	E	39	55	anti-parallel
Strand 4	E	51	63	anti-parallel
Strand 5	E	15	18	anti-parallel
Strand 6	E	8	12	anti-parallel
Strand 7	A	35	43	anti-parallel
Strand 8	A	46	51	anti-parallel
Strand 9	A	13	17	anti-parallel
Strand 10	A	11	10	anti-parallel
Strand 11	D	39	55	anti-parallel
Strand 12	D	29	40	anti-parallel
Strand 13	D	69	72	anti-parallel

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There are 13 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	69	72	first strand
Strand 2	D	29	40	anti-parallel
Strand 3	D	39	55	anti-parallel
Strand 4	A	11	10	anti-parallel
Strand 5	A	63	70	anti-parallel
Strand 6	A	26	30	anti-parallel
Strand 7	A	35	43	anti-parallel
Strand 8	A	46	51	anti-parallel
Strand 9	A	13	17	anti-parallel
Strand 10	A	11	10	anti-parallel
Strand 11	D	39	55	anti-parallel
Strand 12	D	29	40	anti-parallel
Strand 13	D	69	72	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	72	75	first strand
Strand 2	A	189	192	anti-parallel

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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	84	first strand
Strand 2	A	289	295	parallel
Strand 3	A	253	261	parallel
Strand 4	A	323	329	parallel
Strand 5	A	381	390	parallel
Strand 6	A	370	373	anti-parallel
Strand 7	A	201	203	anti-parallel

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There are 8 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	84	first strand
Strand 2	A	289	295	parallel
Strand 3	A	253	261	parallel
Strand 4	A	323	329	parallel
Strand 5	A	381	390	parallel
Strand 6	A	227	231	parallel
Strand 7	A	411	412	parallel
Strand 8	A	434	435	anti-parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	147	150	first strand
Strand 2	A	135	139	anti-parallel
Strand 3	A	118	122	anti-parallel
Strand 4	A	165	167	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	129	130	first strand
Strand 2	A	157	169	anti-parallel
Strand 3	A	174	178	anti-parallel
Strand 4	A	181	185	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	72	75	first strand
Strand 2	B	189	192	anti-parallel

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There are 7 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	83	84	first strand
Strand 2	B	289	294	parallel
Strand 3	B	253	259	parallel
Strand 4	B	323	329	parallel
Strand 5	B	381	390	parallel
Strand 6	B	370	374	anti-parallel
Strand 7	B	199	203	anti-parallel

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There are 8 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	83	84	first strand
Strand 2	B	289	294	parallel
Strand 3	B	253	259	parallel
Strand 4	B	323	329	parallel
Strand 5	B	381	390	parallel
Strand 6	B	227	231	parallel
Strand 7	B	411	412	parallel
Strand 8	B	434	435	anti-parallel

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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	147	150	first strand
Strand 2	B	135	139	anti-parallel
Strand 3	B	118	122	anti-parallel
Strand 4	B	165	167	anti-parallel

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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	129	130	first strand
Strand 2	B	157	169	anti-parallel
Strand 3	B	174	178	anti-parallel
Strand 4	B	181	185	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	72	75	first strand
Strand 2	C	189	192	anti-parallel

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There are 7 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	83	84	first strand
Strand 2	C	289	294	parallel
Strand 3	C	253	259	parallel
Strand 4	C	323	329	parallel
Strand 5	C	381	390	parallel
Strand 6	C	370	374	anti-parallel
Strand 7	C	199	203	anti-parallel

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There are 8 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	83	84	first strand
Strand 2	C	289	294	parallel
Strand 3	C	253	259	parallel
Strand 4	C	323	329	parallel
Strand 5	C	381	390	parallel
Strand 6	C	227	231	parallel
Strand 7	C	411	412	parallel
Strand 8	C	434	435	anti-parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	102	103	first strand
Strand 2	F	115	116	anti-parallel

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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	146	150	first strand
Strand 2	C	135	140	anti-parallel
Strand 3	C	118	122	anti-parallel
Strand 4	C	165	167	anti-parallel

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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	129	130	first strand
Strand 2	C	157	169	anti-parallel
Strand 3	C	174	178	anti-parallel
Strand 4	C	181	185	anti-parallel

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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	78	81	first strand
Strand 2	D	107	110	anti-parallel

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There are 7 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	89	98	first strand
Strand 2	D	207	213	parallel
Strand 3	D	177	186	parallel
Strand 4	D	242	248	parallel
Strand 5	D	297	312	parallel
Strand 6	D	296	291	anti-parallel
Strand 7	D	121	122	anti-parallel

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There are 8 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	89	98	first strand
Strand 2	D	207	213	parallel
Strand 3	D	177	186	parallel
Strand 4	D	242	248	parallel
Strand 5	D	297	312	parallel
Strand 6	D	149	151	parallel
Strand 7	D	325	328	parallel
Strand 8	D	348	349	anti-parallel

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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	135	129	first strand
Strand 2	D	169	170	anti-parallel

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There are 2 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	78	81	first strand
Strand 2	E	107	110	anti-parallel

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There are 7 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	89	98	first strand
Strand 2	E	207	213	parallel
Strand 3	E	177	186	parallel
Strand 4	E	242	248	parallel
Strand 5	E	297	312	parallel
Strand 6	E	296	291	anti-parallel
Strand 7	E	121	122	anti-parallel

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There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	89	98	first strand
Strand 2	E	207	213	parallel
Strand 3	E	177	186	parallel
Strand 4	E	242	248	parallel
Strand 5	E	297	312	parallel
Strand 6	E	149	151	parallel
Strand 7	E	325	328	parallel
Strand 8	E	348	349	anti-parallel

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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	78	81	first strand
Strand 2	F	107	110	anti-parallel

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There are 8 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	89	98	first strand
Strand 2	F	207	213	parallel
Strand 3	F	178	186	parallel
Strand 4	F	242	248	parallel
Strand 5	F	297	312	parallel
Strand 6	F	149	151	parallel
Strand 7	F	325	328	parallel
Strand 8	F	348	349	anti-parallel

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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	121	122	first strand
Strand 2	F	290	291	anti-parallel

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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	126	127	first strand
Strand 2	F	149	143	anti-parallel

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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	100	97	first strand
Strand 2	G	100	104	anti-parallel

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There are 4 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	23	25	first strand
Strand 2	H	4	8	parallel
Strand 3	H	45	51	parallel
Strand 4	H	72	76	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3VR5

Analysis of interatomic Contacts of Structural Units in PDB entry:
3VR5