Analysis of interatomic Contacts of Structural Units in PDB entry:
3VR6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3VR6 entry

There are 3 chains in PDB entry 3VR6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 0	SER 586
B	SER -5	SER 586
C	MET 1	GLU 115

There are139 helices in PDB entry 3VR6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	90	99	Right-handed alpha
Helix 2	2	A	213	220	Right-handed alpha
Helix 3	3	A	237	249	Right-handed alpha
Helix 4	4	A	262	276	Right-handed alpha
Helix 5	5	A	284	287	Right-handed 310
Helix 6	6	A	299	320	Right-handed alpha
Helix 7	7	A	330	345	Right-handed alpha
Helix 8	8	A	350	354	Right-handed 310
Helix 9	9	A	357	367	Right-handed alpha
Helix 10	10	A	399	406	Right-handed alpha
Helix 11	11	A	416	422	Right-handed alpha
Helix 12	12	A	437	450	Right-handed alpha
Helix 13	13	A	452	478	Right-handed alpha
Helix 14	14	A	479	482	Right-handed 310
Helix 15	15	A	483	500	Right-handed alpha
Helix 16	16	A	514	538	Right-handed alpha
Helix 17	17	A	541	549	Right-handed alpha
Helix 18	18	A	549	559	Right-handed alpha
Helix 19	19	A	560	562	Right-handed 310
Helix 20	20	A	563	566	Right-handed 310
Helix 21	21	A	567	572	Right-handed alpha
Helix 22	22	A	572	586	Right-handed alpha
Helix 23	23	B	90	99	Right-handed alpha
Helix 24	24	B	213	220	Right-handed alpha
Helix 25	25	B	237	249	Right-handed alpha
Helix 26	26	B	262	273	Right-handed alpha
Helix 27	27	B	284	287	Right-handed 310
Helix 28	28	B	300	320	Right-handed alpha
Helix 29	29	B	331	345	Right-handed alpha
Helix 30	30	B	357	367	Right-handed alpha
Helix 31	31	B	392	396	Right-handed 310
Helix 32	32	B	399	407	Right-handed alpha
Helix 33	33	B	416	422	Right-handed alpha
Helix 34	34	B	437	450	Right-handed alpha
Helix 35	35	B	452	477	Right-handed alpha
Helix 36	36	B	478	482	Right-handed 310
Helix 37	37	B	483	500	Right-handed alpha
Helix 38	38	B	514	539	Right-handed alpha
Helix 39	39	B	541	549	Right-handed alpha
Helix 40	40	B	549	557	Right-handed alpha
Helix 41	41	B	558	562	Right-handed 310
Helix 42	42	B	563	566	Right-handed 310
Helix 43	43	B	567	572	Right-handed alpha
Helix 44	44	B	572	585	Right-handed alpha
Helix 45	45	C	90	99	Right-handed alpha
Helix 46	46	C	213	220	Right-handed alpha
Helix 47	47	C	237	249	Right-handed alpha
Helix 48	48	C	262	273	Right-handed alpha
Helix 49	49	C	274	276	Right-handed 310
Helix 50	50	C	284	287	Right-handed 310
Helix 51	51	C	301	320	Right-handed alpha
Helix 52	52	C	330	346	Right-handed alpha
Helix 53	53	C	350	354	Right-handed 310
Helix 54	54	C	355	356	Right-handed 310
Helix 55	55	C	357	368	Right-handed alpha
Helix 56	56	C	392	396	Right-handed 310
Helix 57	57	C	399	409	Right-handed alpha
Helix 58	58	C	416	422	Right-handed alpha
Helix 59	59	C	437	450	Right-handed alpha
Helix 60	60	C	452	475	Right-handed alpha
Helix 61	61	C	483	500	Right-handed alpha
Helix 62	62	C	514	537	Right-handed alpha
Helix 63	63	C	541	548	Right-handed alpha
Helix 64	64	C	549	559	Right-handed alpha
Helix 65	65	C	560	562	Right-handed 310
Helix 66	66	C	563	566	Right-handed 310
Helix 67	67	C	567	572	Right-handed alpha
Helix 68	68	C	572	585	Right-handed alpha
Helix 69	69	D	82	86	Right-handed 310
Helix 70	70	D	117	119	Right-handed 310
Helix 71	71	D	132	137	Right-handed alpha
Helix 72	72	D	156	168	Right-handed alpha
Helix 73	73	D	187	201	Right-handed alpha
Helix 74	74	D	202	205	Right-handed 310
Helix 75	75	D	217	238	Right-handed alpha
Helix 76	76	D	249	264	Right-handed alpha
Helix 77	77	D	269	273	Right-handed 310
Helix 78	78	D	274	275	Right-handed 310
Helix 79	79	D	276	286	Right-handed alpha
Helix 80	80	D	307	310	Right-handed 310
Helix 81	81	D	313	323	Right-handed alpha
Helix 82	82	D	330	336	Right-handed alpha
Helix 83	83	D	351	356	Right-handed 310
Helix 84	84	D	364	390	Right-handed alpha
Helix 85	85	D	391	394	Right-handed 310
Helix 86	86	D	395	411	Right-handed alpha
Helix 87	87	D	422	435	Right-handed alpha
Helix 88	88	D	446	454	Right-handed alpha
Helix 89	89	E	82	86	Right-handed 310
Helix 90	90	E	132	137	Right-handed alpha
Helix 91	91	E	156	168	Right-handed alpha
Helix 92	92	E	187	202	Right-handed alpha
Helix 93	93	E	203	205	Right-handed 310
Helix 94	94	E	217	238	Right-handed alpha
Helix 95	95	E	249	264	Right-handed alpha
Helix 96	96	E	269	273	Right-handed 310
Helix 97	97	E	276	286	Right-handed alpha
Helix 98	98	E	307	310	Right-handed 310
Helix 99	99	E	313	323	Right-handed alpha
Helix 100	100	E	330	335	Right-handed alpha
Helix 101	101	E	351	356	Right-handed 310
Helix 102	102	E	364	390	Right-handed alpha
Helix 103	103	E	391	394	Right-handed 310
Helix 104	104	E	395	412	Right-handed alpha
Helix 105	105	E	422	435	Right-handed alpha
Helix 106	106	E	436	437	Right-handed 310
Helix 107	107	E	438	442	Right-handed 310
Helix 108	108	E	446	454	Right-handed alpha
Helix 109	109	F	82	86	Right-handed 310
Helix 110	110	F	132	137	Right-handed alpha
Helix 111	111	F	156	168	Right-handed alpha
Helix 112	112	F	187	202	Right-handed alpha
Helix 113	113	F	203	205	Right-handed 310
Helix 114	114	F	218	222	Right-handed 310
Helix 115	115	F	223	239	Right-handed alpha
Helix 116	116	F	249	264	Right-handed alpha
Helix 117	117	F	269	273	Right-handed 310
Helix 118	118	F	276	286	Right-handed alpha
Helix 119	119	F	307	310	Right-handed 310
Helix 120	120	F	313	323	Right-handed alpha
Helix 121	121	F	330	336	Right-handed alpha
Helix 122	122	F	364	390	Right-handed alpha
Helix 123	123	F	391	394	Right-handed 310
Helix 124	124	F	397	412	Right-handed alpha
Helix 125	125	F	422	435	Right-handed alpha
Helix 126	126	F	436	437	Right-handed 310
Helix 127	127	F	438	442	Right-handed 310
Helix 128	128	F	446	454	Right-handed alpha
Helix 129	129	G	8	68	Right-handed alpha
Helix 130	130	G	78	83	Right-handed 310
Helix 131	131	G	129	138	Right-handed alpha
Helix 132	132	G	139	173	Right-handed alpha
Helix 133	133	G	173	205	Right-handed alpha
Helix 134	134	H	10	15	Right-handed alpha
Helix 135	135	H	16	21	Right-handed 310
Helix 136	136	H	29	43	Right-handed alpha
Helix 137	137	H	52	57	Right-handed alpha
Helix 138	138	H	58	63	Right-handed alpha
Helix 139	139	H	84	99	Right-handed alpha

There are 32 sheets in PDB entry 3VR6. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF,

There are 27 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	69	72	first strand
Strand 2	D	29	40	anti-parallel
Strand 3	D	39	55	anti-parallel
Strand 4	D	51	63	anti-parallel
Strand 5	D	15	19	anti-parallel
Strand 6	D	8	12	anti-parallel
Strand 7	C	35	43	anti-parallel
Strand 8	C	26	30	anti-parallel
Strand 9	C	63	70	anti-parallel
Strand 10	C	3	10	anti-parallel
Strand 11	C	13	17	anti-parallel
Strand 12	C	46	51	anti-parallel
Strand 13	C	35	43	anti-parallel
Strand 14	C	26	30	anti-parallel
Strand 15	C	63	70	anti-parallel
Strand 16	C	3	10	anti-parallel
Strand 17	F	39	55	anti-parallel
Strand 18	F	51	63	anti-parallel
Strand 19	F	15	18	anti-parallel
Strand 20	F	8	12	anti-parallel
Strand 21	B	35	43	anti-parallel
Strand 22	B	26	30	anti-parallel
Strand 23	B	63	70	anti-parallel
Strand 24	B	11	10	anti-parallel
Strand 25	E	39	55	anti-parallel
Strand 26	E	29	40	anti-parallel
Strand 27	E	69	72	anti-parallel

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There are 14 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	5	first strand
Strand 2	F	69	76	anti-parallel
Strand 3	F	28	40	anti-parallel
Strand 4	F	39	55	anti-parallel
Strand 5	F	51	63	anti-parallel
Strand 6	F	15	18	anti-parallel
Strand 7	F	8	12	anti-parallel
Strand 8	B	35	43	anti-parallel
Strand 9	B	46	51	anti-parallel
Strand 10	B	13	17	anti-parallel
Strand 11	B	11	10	anti-parallel
Strand 12	E	39	55	anti-parallel
Strand 13	E	29	40	anti-parallel
Strand 14	E	69	72	anti-parallel

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There are 13 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	69	72	first strand
Strand 2	E	29	40	anti-parallel
Strand 3	E	39	55	anti-parallel
Strand 4	E	51	63	anti-parallel
Strand 5	E	15	19	anti-parallel
Strand 6	E	8	12	anti-parallel
Strand 7	A	35	43	anti-parallel
Strand 8	A	46	51	anti-parallel
Strand 9	A	13	17	anti-parallel
Strand 10	A	2	10	anti-parallel
Strand 11	D	39	55	anti-parallel
Strand 12	D	29	40	anti-parallel
Strand 13	D	69	72	anti-parallel

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There are 13 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	69	72	first strand
Strand 2	D	29	40	anti-parallel
Strand 3	D	39	55	anti-parallel
Strand 4	A	2	10	anti-parallel
Strand 5	A	63	66	anti-parallel
Strand 6	A	27	30	anti-parallel
Strand 7	A	35	43	anti-parallel
Strand 8	A	46	51	anti-parallel
Strand 9	A	13	17	anti-parallel
Strand 10	A	2	10	anti-parallel
Strand 11	D	39	55	anti-parallel
Strand 12	D	29	40	anti-parallel
Strand 13	D	69	72	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	72	75	first strand
Strand 2	A	189	192	anti-parallel

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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	84	first strand
Strand 2	A	289	295	parallel
Strand 3	A	253	261	parallel
Strand 4	A	323	329	parallel
Strand 5	A	381	390	parallel
Strand 6	A	370	373	anti-parallel
Strand 7	A	201	203	anti-parallel

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There are 8 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	84	first strand
Strand 2	A	289	295	parallel
Strand 3	A	253	261	parallel
Strand 4	A	323	329	parallel
Strand 5	A	381	390	parallel
Strand 6	A	227	231	parallel
Strand 7	A	411	412	parallel
Strand 8	A	434	435	anti-parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	146	150	first strand
Strand 2	A	135	140	anti-parallel
Strand 3	A	118	122	anti-parallel
Strand 4	A	165	167	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	129	130	first strand
Strand 2	A	157	169	anti-parallel
Strand 3	A	174	178	anti-parallel
Strand 4	A	181	185	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	72	75	first strand
Strand 2	B	189	192	anti-parallel

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There are 7 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	83	84	first strand
Strand 2	B	289	294	parallel
Strand 3	B	253	259	parallel
Strand 4	B	323	329	parallel
Strand 5	B	381	390	parallel
Strand 6	B	370	373	anti-parallel
Strand 7	B	201	203	anti-parallel

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There are 8 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	83	84	first strand
Strand 2	B	289	294	parallel
Strand 3	B	253	259	parallel
Strand 4	B	323	329	parallel
Strand 5	B	381	390	parallel
Strand 6	B	227	231	parallel
Strand 7	B	411	412	parallel
Strand 8	B	434	435	anti-parallel

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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	147	150	first strand
Strand 2	B	135	139	anti-parallel
Strand 3	B	118	122	anti-parallel
Strand 4	B	165	167	anti-parallel

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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	129	130	first strand
Strand 2	B	157	169	anti-parallel
Strand 3	B	174	178	anti-parallel
Strand 4	B	181	185	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	72	75	first strand
Strand 2	C	189	192	anti-parallel

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There are 7 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	83	84	first strand
Strand 2	C	289	294	parallel
Strand 3	C	253	259	parallel
Strand 4	C	323	329	parallel
Strand 5	C	381	390	parallel
Strand 6	C	371	373	anti-parallel
Strand 7	C	201	203	anti-parallel

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There are 8 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	83	84	first strand
Strand 2	C	289	294	parallel
Strand 3	C	253	259	parallel
Strand 4	C	323	329	parallel
Strand 5	C	381	390	parallel
Strand 6	C	227	231	parallel
Strand 7	C	411	412	parallel
Strand 8	C	434	435	anti-parallel

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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	146	150	first strand
Strand 2	C	135	140	anti-parallel
Strand 3	C	118	122	anti-parallel
Strand 4	C	165	167	anti-parallel

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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	129	130	first strand
Strand 2	C	157	169	anti-parallel
Strand 3	C	174	184	anti-parallel
Strand 4	C	190	185	anti-parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	78	81	first strand
Strand 2	D	107	110	anti-parallel

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There are 7 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	95	90	first strand
Strand 2	D	207	213	parallel
Strand 3	D	177	186	parallel
Strand 4	D	242	248	parallel
Strand 5	D	297	312	parallel
Strand 6	D	296	291	anti-parallel
Strand 7	D	121	122	anti-parallel

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There are 8 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	95	90	first strand
Strand 2	D	207	213	parallel
Strand 3	D	177	186	parallel
Strand 4	D	242	248	parallel
Strand 5	D	297	312	parallel
Strand 6	D	149	151	parallel
Strand 7	D	325	329	parallel
Strand 8	D	342	349	anti-parallel

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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	127	135	first strand
Strand 2	D	141	149	anti-parallel

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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	78	81	first strand
Strand 2	E	107	110	anti-parallel

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There are 8 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	95	98	first strand
Strand 2	E	207	213	parallel
Strand 3	E	177	186	parallel
Strand 4	E	242	248	parallel
Strand 5	E	297	312	parallel
Strand 6	E	149	151	parallel
Strand 7	E	325	328	parallel
Strand 8	E	348	349	anti-parallel

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There are 2 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	121	122	first strand
Strand 2	E	290	291	anti-parallel

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There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	127	135	first strand
Strand 2	E	141	149	anti-parallel

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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	78	81	first strand
Strand 2	F	107	110	anti-parallel

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There are 8 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	89	98	first strand
Strand 2	F	207	213	parallel
Strand 3	F	178	186	parallel
Strand 4	F	242	248	parallel
Strand 5	F	297	312	parallel
Strand 6	F	149	151	parallel
Strand 7	F	325	328	parallel
Strand 8	F	348	349	anti-parallel

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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	121	122	first strand
Strand 2	F	290	291	anti-parallel

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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	97	97	first strand
Strand 2	G	100	107	anti-parallel

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There are 4 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	23	25	first strand
Strand 2	H	4	8	parallel
Strand 3	H	45	51	parallel
Strand 4	H	72	76	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3VR6

Analysis of interatomic Contacts of Structural Units in PDB entry:
3VR6