Analysis of interatomic Contacts of Structural Units in PDB entry:
3VR9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VR9 entry

There are 8 chains in PDB entry 3VR9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 33TYR 645
B
 LYS 33ASN 281
C
 GLU 34THR 186
D
 THR 28LEU 156
E
 ALA 33TYR 645
F
 LYS 33ASN 281
G
 GLU 34THR 186
H
 THR 28LEU 156
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 85 helices in PDB entry 3VR9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
50 63Right-handed alpha
Helix 2
2
A
74 83Right-handed 310
Helix 3
3
A
98 110Right-handed alpha
Helix 4
4
A
115 137Right-handed alpha
Helix 5
5
A
175 189Right-handed alpha
Helix 6
6
A
239 243Right-handed 310
Helix 7
7
A
255 263Right-handed alpha
Helix 8
8
A
289 294Right-handed alpha
Helix 9
9
A
306 311Right-handed alpha
Helix 10
10
A
314 318Right-handed 310
Helix 11
11
A
319 333Right-handed alpha
Helix 12
12
A
352 360Right-handed alpha
Helix 13
13
A
360 371Right-handed alpha
Helix 14
14
A
436 456Right-handed alpha
Helix 15
15
A
470 482Right-handed alpha
Helix 16
16
A
489 504Right-handed alpha
Helix 17
17
A
509 527Right-handed alpha
Helix 18
18
A
540 566Right-handed alpha
Helix 19
19
B
67 75Right-handed alpha
Helix 20
20
B
109 111Right-handed 310
Helix 21
21
B
139 149Right-handed alpha
Helix 22
22
B
169 174Right-handed alpha
Helix 23
23
B
175 177Right-handed 310
Helix 24
24
B
188 191Right-handed 310
Helix 25
25
B
192 199Right-handed alpha
Helix 26
26
B
204 216Right-handed alpha
Helix 27
27
B
222 230Right-handed alpha
Helix 28
28
B
243 249Right-handed alpha
Helix 29
29
B
254 264Right-handed alpha
Helix 30
30
C
36 52Right-handed alpha
Helix 31
31
C
66 95Right-handed alpha
Helix 32
32
C
100 109Right-handed alpha
Helix 33
33
C
113 121Right-handed alpha
Helix 34
34
C
121 143Right-handed alpha
Helix 35
35
C
148 169Right-handed alpha
Helix 36
36
D
43 47Right-handed 310
Helix 37
37
D
55 79Right-handed alpha
Helix 38
38
D
81 108Right-handed alpha
Helix 39
39
D
109 114Right-handed alpha
Helix 40
40
D
114 142Right-handed alpha
Helix 41
41
D
145 155Right-handed alpha
Helix 42
42
E
50 63Right-handed alpha
Helix 43
43
E
74 83Right-handed 310
Helix 44
44
E
98 110Right-handed alpha
Helix 45
45
E
115 125Right-handed alpha
Helix 46
46
E
125 137Right-handed alpha
Helix 47
47
E
175 189Right-handed alpha
Helix 48
48
E
239 243Right-handed 310
Helix 49
49
E
254 262Right-handed alpha
Helix 50
50
E
289 294Right-handed alpha
Helix 51
51
E
306 311Right-handed alpha
Helix 52
52
E
314 318Right-handed 310
Helix 53
53
E
319 334Right-handed alpha
Helix 54
54
E
354 359Right-handed alpha
Helix 55
55
E
360 372Right-handed alpha
Helix 56
56
E
436 456Right-handed alpha
Helix 57
57
E
470 483Right-handed alpha
Helix 58
58
E
489 504Right-handed alpha
Helix 59
59
E
509 521Right-handed alpha
Helix 60
60
E
522 527Right-handed alpha
Helix 61
61
E
540 565Right-handed alpha
Helix 62
62
E
598 602Right-handed 310
Helix 63
63
F
62 64Right-handed 310
Helix 64
64
F
67 78Right-handed alpha
Helix 65
65
F
109 111Right-handed 310
Helix 66
66
F
139 148Right-handed alpha
Helix 67
67
F
169 175Right-handed alpha
Helix 68
68
F
188 191Right-handed 310
Helix 69
69
F
192 199Right-handed alpha
Helix 70
70
F
204 216Right-handed alpha
Helix 71
71
F
222 229Right-handed alpha
Helix 72
72
F
244 249Right-handed alpha
Helix 73
73
F
254 266Right-handed alpha
Helix 74
74
G
36 52Right-handed alpha
Helix 75
75
G
66 95Right-handed alpha
Helix 76
76
G
99 109Right-handed alpha
Helix 77
77
G
115 142Right-handed alpha
Helix 78
78
G
148 169Right-handed alpha
Helix 79
79
G
172 177Right-handed alpha
Helix 80
80
H
55 70Right-handed alpha
Helix 81
81
H
71 79Right-handed alpha
Helix 82
82
H
81 108Right-handed alpha
Helix 83
83
H
109 114Right-handed alpha
Helix 84
84
H
116 143Right-handed alpha
Helix 85
85
H
145 155Right-handed alpha
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There are 24 sheets in PDB entry 3VR9. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
193 197first strand
Strand 2
A
67 71parallel
Strand 3
A
37 47parallel
Strand 4
A
224 234parallel
Strand 5
A
410 418parallel
Strand 6
A
400 404anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
199 205first strand
Strand 2
A
213 218anti-parallel
Strand 3
A
224 234anti-parallel
Strand 4
A
37 47parallel
Strand 5
D
32 33parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 88first strand
Strand 2
A
169 170anti-parallel
Strand 3
A
150 151anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 143first strand
Strand 2
A
147 148anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
267 268first strand
Strand 2
A
605 611anti-parallel
Strand 3
A
618 619anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
267 268first strand
Strand 2
A
605 611anti-parallel
Strand 3
A
622 624anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
274 280first strand
Strand 2
A
380 388anti-parallel
Strand 3
A
344 347anti-parallel
Strand 4
A
297 299anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
393 394first strand
Strand 2
A
423 424parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
487 488first strand
Strand 2
A
530 531parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
507 508first strand
Strand 2
A
574 575parallel
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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 60first strand
Strand 2
B
35 42anti-parallel
Strand 3
B
121 124parallel
Strand 4
B
98 101anti-parallel
Strand 5
B
104 107anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
131 133first strand
Strand 2
B
136 137anti-parallel
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There are 5 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
193 197first strand
Strand 2
E
67 71parallel
Strand 3
E
37 47parallel
Strand 4
E
224 234parallel
Strand 5
E
416 418parallel
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There are 5 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
199 206first strand
Strand 2
E
211 218anti-parallel
Strand 3
E
224 234anti-parallel
Strand 4
E
37 47parallel
Strand 5
H
32 33parallel
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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
87 88first strand
Strand 2
E
169 170anti-parallel
Strand 3
E
150 151anti-parallel
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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
142 143first strand
Strand 2
E
147 148anti-parallel
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There are 3 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
267 268first strand
Strand 2
E
605 611anti-parallel
Strand 3
E
618 624anti-parallel
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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
273 280first strand
Strand 2
E
379 389anti-parallel
Strand 3
E
344 347anti-parallel
Strand 4
E
297 299anti-parallel
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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
393 394first strand
Strand 2
E
423 424parallel
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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
402 404first strand
Strand 2
E
410 412anti-parallel
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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
487 488first strand
Strand 2
E
530 531parallel
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There are 3 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
507 508first strand
Strand 2
E
573 575parallel
Strand 3
E
569 570anti-parallel
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There are 5 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
53 60first strand
Strand 2
F
35 42anti-parallel
Strand 3
F
122 124parallel
Strand 4
F
98 101anti-parallel
Strand 5
F
104 107anti-parallel
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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
131 133first strand
Strand 2
F
136 137anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il