Analysis of interatomic Contacts of Structural Units in PDB entry:
3VRM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VRM entry

There is 1 chain in PDB entry 3VRM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2ALA 403
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 3VRM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 20Right-handed 310
Helix 2
2
A
22 33Right-handed alpha
Helix 3
3
A
50 59Right-handed alpha
Helix 4
4
A
66 70Right-handed 310
Helix 5
5
A
72 76Right-handed 310
Helix 6
6
A
86 90Right-handed 310
Helix 7
7
A
93 104Right-handed alpha
Helix 8
8
A
107 113Right-handed alpha
Helix 9
9
A
114 127Right-handed alpha
Helix 10
10
A
137 141Right-handed alpha
Helix 11
11
A
143 155Right-handed alpha
Helix 12
12
A
157 159Right-handed 310
Helix 13
13
A
160 173Right-handed alpha
Helix 14
14
A
176 201Right-handed alpha
Helix 15
15
A
205 217Right-handed alpha
Helix 16
16
A
222 255Right-handed alpha
Helix 17
17
A
255 265Right-handed alpha
Helix 18
18
A
268 280Right-handed alpha
Helix 19
19
A
311 316Right-handed alpha
Helix 20
20
A
349 368Right-handed alpha
Helix 21
21
A
376 380Right-handed 310
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There are 3 sheets in PDB entry 3VRM. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 40first strand
Strand 2
A
43 48anti-parallel
Strand 3
A
307 310parallel
Strand 4
A
289 291anti-parallel
Strand 5
A
63 64anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 136first strand
Strand 2
A
395 397anti-parallel
Strand 3
A
372 373anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
295 297first strand
Strand 2
A
300 302anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il