Analysis of interatomic Contacts of Structural Units in PDB entry:
3VS9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3VS9 entry

There are 4 chains in PDB entry 3VS9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 6	ILE 409
B	HIS 6	ILE 409
C	HIS 6	ILE 409
D	HIS 6	ASP 99

There are150 helices in PDB entry 3VS9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	26	45	Right-handed alpha
Helix 2	2	A	49	68	Right-handed alpha
Helix 3	3	A	84	86	Right-handed 310
Helix 4	4	A	101	108	Right-handed 310
Helix 5	5	A	120	140	Right-handed alpha
Helix 6	6	A	162	171	Right-handed alpha
Helix 7	7	A	184	187	Right-handed 310
Helix 8	8	A	188	206	Right-handed alpha
Helix 9	9	A	223	226	Right-handed 310
Helix 10	10	A	232	242	Right-handed alpha
Helix 11	11	A	254	260	Right-handed alpha
Helix 12	12	A	278	280	Right-handed 310
Helix 13	13	A	298	318	Right-handed alpha
Helix 14	14	A	321	326	Right-handed alpha
Helix 15	15	A	327	329	Right-handed 310
Helix 16	16	A	339	349	Right-handed alpha
Helix 17	17	A	351	366	Right-handed alpha
Helix 18	18	A	368	370	Right-handed 310
Helix 19	19	A	371	384	Right-handed alpha
Helix 20	20	B	26	46	Right-handed alpha
Helix 21	21	B	49	68	Right-handed alpha
Helix 22	22	B	84	86	Right-handed 310
Helix 23	23	B	103	108	Right-handed 310
Helix 24	24	B	120	140	Right-handed alpha
Helix 25	25	B	162	171	Right-handed alpha
Helix 26	26	B	184	187	Right-handed 310
Helix 27	27	B	188	206	Right-handed alpha
Helix 28	28	B	221	226	Right-handed 310
Helix 29	29	B	232	242	Right-handed alpha
Helix 30	30	B	254	260	Right-handed alpha
Helix 31	31	B	278	280	Right-handed 310
Helix 32	32	B	298	318	Right-handed alpha
Helix 33	33	B	321	327	Right-handed alpha
Helix 34	34	B	339	348	Right-handed alpha
Helix 35	35	B	351	366	Right-handed alpha
Helix 36	36	B	368	370	Right-handed 310
Helix 37	37	B	371	384	Right-handed alpha
Helix 38	38	C	26	45	Right-handed alpha
Helix 39	39	C	49	68	Right-handed alpha
Helix 40	40	C	101	108	Right-handed 310
Helix 41	41	C	120	140	Right-handed alpha
Helix 42	42	C	162	171	Right-handed alpha
Helix 43	43	C	184	187	Right-handed 310
Helix 44	44	C	188	206	Right-handed alpha
Helix 45	45	C	221	226	Right-handed 310
Helix 46	46	C	232	242	Right-handed alpha
Helix 47	47	C	254	260	Right-handed alpha
Helix 48	48	C	278	280	Right-handed 310
Helix 49	49	C	298	318	Right-handed alpha
Helix 50	50	C	321	326	Right-handed alpha
Helix 51	51	C	327	329	Right-handed 310
Helix 52	52	C	339	349	Right-handed alpha
Helix 53	53	C	351	366	Right-handed alpha
Helix 54	54	C	368	370	Right-handed 310
Helix 55	55	C	371	384	Right-handed alpha
Helix 56	56	D	26	45	Right-handed alpha
Helix 57	57	D	49	68	Right-handed alpha
Helix 58	58	D	84	86	Right-handed 310
Helix 59	59	D	104	108	Right-handed 310
Helix 60	60	D	120	140	Right-handed alpha
Helix 61	61	D	162	171	Right-handed alpha
Helix 62	62	D	184	187	Right-handed 310
Helix 63	63	D	188	206	Right-handed alpha
Helix 64	64	D	221	226	Right-handed 310
Helix 65	65	D	232	242	Right-handed alpha
Helix 66	66	D	254	260	Right-handed alpha
Helix 67	67	D	278	280	Right-handed 310
Helix 68	68	D	298	318	Right-handed alpha
Helix 69	69	D	321	326	Right-handed alpha
Helix 70	70	D	327	329	Right-handed 310
Helix 71	71	D	339	349	Right-handed alpha
Helix 72	72	D	351	366	Right-handed alpha
Helix 73	73	D	368	370	Right-handed 310
Helix 74	74	D	371	384	Right-handed alpha
Helix 75	75	E	26	46	Right-handed alpha
Helix 76	76	E	49	68	Right-handed alpha
Helix 77	77	E	84	88	Right-handed 310
Helix 78	78	E	101	108	Right-handed 310
Helix 79	79	E	120	140	Right-handed alpha
Helix 80	80	E	162	171	Right-handed alpha
Helix 81	81	E	184	187	Right-handed 310
Helix 82	82	E	188	206	Right-handed alpha
Helix 83	83	E	221	226	Right-handed 310
Helix 84	84	E	232	242	Right-handed alpha
Helix 85	85	E	254	260	Right-handed alpha
Helix 86	86	E	278	280	Right-handed 310
Helix 87	87	E	298	318	Right-handed alpha
Helix 88	88	E	321	326	Right-handed alpha
Helix 89	89	E	327	329	Right-handed 310
Helix 90	90	E	339	349	Right-handed alpha
Helix 91	91	E	351	366	Right-handed alpha
Helix 92	92	E	368	370	Right-handed 310
Helix 93	93	E	371	384	Right-handed alpha
Helix 94	94	F	26	45	Right-handed alpha
Helix 95	95	F	49	68	Right-handed alpha
Helix 96	96	F	84	86	Right-handed 310
Helix 97	97	F	101	108	Right-handed 310
Helix 98	98	F	120	140	Right-handed alpha
Helix 99	99	F	162	171	Right-handed alpha
Helix 100	100	F	184	187	Right-handed 310
Helix 101	101	F	188	206	Right-handed alpha
Helix 102	102	F	223	226	Right-handed 310
Helix 103	103	F	232	242	Right-handed alpha
Helix 104	104	F	254	260	Right-handed alpha
Helix 105	105	F	278	280	Right-handed 310
Helix 106	106	F	298	318	Right-handed alpha
Helix 107	107	F	321	326	Right-handed alpha
Helix 108	108	F	339	349	Right-handed alpha
Helix 109	109	F	351	354	Right-handed 310
Helix 110	110	F	355	366	Right-handed alpha
Helix 111	111	F	368	370	Right-handed 310
Helix 112	112	F	371	384	Right-handed alpha
Helix 113	113	G	26	45	Right-handed alpha
Helix 114	114	G	53	68	Right-handed alpha
Helix 115	115	G	84	86	Right-handed 310
Helix 116	116	G	103	108	Right-handed 310
Helix 117	117	G	120	140	Right-handed alpha
Helix 118	118	G	162	171	Right-handed alpha
Helix 119	119	G	184	187	Right-handed 310
Helix 120	120	G	188	205	Right-handed alpha
Helix 121	121	G	221	226	Right-handed 310
Helix 122	122	G	232	242	Right-handed alpha
Helix 123	123	G	254	260	Right-handed alpha
Helix 124	124	G	278	280	Right-handed 310
Helix 125	125	G	298	318	Right-handed alpha
Helix 126	126	G	321	326	Right-handed alpha
Helix 127	127	G	327	329	Right-handed 310
Helix 128	128	G	339	349	Right-handed alpha
Helix 129	129	G	351	366	Right-handed alpha
Helix 130	130	G	368	370	Right-handed 310
Helix 131	131	G	371	384	Right-handed alpha
Helix 132	132	H	26	43	Right-handed alpha
Helix 133	133	H	57	68	Right-handed alpha
Helix 134	134	H	84	88	Right-handed 310
Helix 135	135	H	103	108	Right-handed 310
Helix 136	136	H	120	140	Right-handed alpha
Helix 137	137	H	162	171	Right-handed alpha
Helix 138	138	H	184	187	Right-handed 310
Helix 139	139	H	188	206	Right-handed alpha
Helix 140	140	H	223	226	Right-handed 310
Helix 141	141	H	232	242	Right-handed alpha
Helix 142	142	H	254	260	Right-handed alpha
Helix 143	143	H	278	280	Right-handed 310
Helix 144	144	H	298	318	Right-handed alpha
Helix 145	145	H	321	326	Right-handed alpha
Helix 146	146	H	339	348	Right-handed alpha
Helix 147	147	H	351	354	Right-handed 310
Helix 148	148	H	355	366	Right-handed alpha
Helix 149	149	H	368	370	Right-handed 310
Helix 150	150	H	371	384	Right-handed alpha

There are 29 sheets in PDB entry 3VS9. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	177	182	first strand
Strand 2	A	149	154	parallel
Strand 3	A	214	221	parallel
Strand 4	A	244	253	anti-parallel
Strand 5	A	10	17	anti-parallel
Strand 6	A	264	274	anti-parallel
Strand 7	A	400	409	anti-parallel
Strand 8	A	389	396	anti-parallel
Strand 9	A	330	333	parallel

Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	24	25	first strand
Strand 2	A	76	77	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	88	89	first strand
Strand 2	A	96	97	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	282	286	first strand
Strand 2	A	291	295	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	177	182	first strand
Strand 2	B	149	154	parallel
Strand 3	B	214	220	parallel
Strand 4	B	245	253	anti-parallel
Strand 5	B	10	18	anti-parallel
Strand 6	B	264	274	anti-parallel
Strand 7	B	400	409	anti-parallel
Strand 8	B	389	396	anti-parallel
Strand 9	B	330	333	parallel

Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	24	25	first strand
Strand 2	B	76	77	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	88	89	first strand
Strand 2	B	96	97	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	282	286	first strand
Strand 2	B	291	295	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	177	182	first strand
Strand 2	C	149	154	parallel
Strand 3	C	214	220	parallel
Strand 4	C	245	253	anti-parallel
Strand 5	C	10	18	anti-parallel
Strand 6	C	264	274	anti-parallel
Strand 7	C	400	409	anti-parallel
Strand 8	C	389	396	anti-parallel
Strand 9	C	330	333	parallel

Back to list of sheets
Back to top of page

There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	24	25	first strand
Strand 2	C	76	77	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	282	286	first strand
Strand 2	C	291	295	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	177	182	first strand
Strand 2	D	149	154	parallel
Strand 3	D	214	220	parallel
Strand 4	D	245	253	anti-parallel
Strand 5	D	10	18	anti-parallel
Strand 6	D	264	274	anti-parallel
Strand 7	D	400	409	anti-parallel
Strand 8	D	389	396	anti-parallel
Strand 9	D	330	333	parallel

Back to list of sheets
Back to top of page

There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	24	25	first strand
Strand 2	D	76	77	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	88	89	first strand
Strand 2	D	96	97	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	282	286	first strand
Strand 2	D	291	295	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	177	182	first strand
Strand 2	E	149	154	parallel
Strand 3	E	214	220	parallel
Strand 4	E	245	253	anti-parallel
Strand 5	E	10	18	anti-parallel
Strand 6	E	264	274	anti-parallel
Strand 7	E	400	409	anti-parallel
Strand 8	E	389	396	anti-parallel
Strand 9	E	330	333	parallel

Back to list of sheets
Back to top of page

There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	24	25	first strand
Strand 2	E	76	77	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	282	286	first strand
Strand 2	E	291	295	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	177	182	first strand
Strand 2	F	149	154	parallel
Strand 3	F	214	221	parallel
Strand 4	F	244	253	anti-parallel
Strand 5	F	10	17	anti-parallel
Strand 6	F	264	274	anti-parallel
Strand 7	F	400	409	anti-parallel
Strand 8	F	389	396	anti-parallel
Strand 9	F	329	333	parallel

Back to list of sheets
Back to top of page

There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	24	25	first strand
Strand 2	F	76	77	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	88	89	first strand
Strand 2	F	96	97	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	282	286	first strand
Strand 2	F	291	295	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	177	182	first strand
Strand 2	G	149	154	parallel
Strand 3	G	214	220	parallel
Strand 4	G	245	253	anti-parallel
Strand 5	G	10	18	anti-parallel
Strand 6	G	264	274	anti-parallel
Strand 7	G	400	409	anti-parallel
Strand 8	G	389	396	anti-parallel
Strand 9	G	330	333	parallel

Back to list of sheets
Back to top of page

There are 2 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	24	25	first strand
Strand 2	G	76	77	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	88	91	first strand
Strand 2	G	94	97	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	282	286	first strand
Strand 2	G	291	295	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	177	182	first strand
Strand 2	H	149	154	parallel
Strand 3	H	214	221	parallel
Strand 4	H	244	253	anti-parallel
Strand 5	H	10	18	anti-parallel
Strand 6	H	264	274	anti-parallel
Strand 7	H	400	409	anti-parallel
Strand 8	H	389	396	anti-parallel
Strand 9	H	329	333	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	24	25	first strand
Strand 2	H	76	77	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	282	286	first strand
Strand 2	H	291	295	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3VS9

Analysis of interatomic Contacts of Structural Units in PDB entry:
3VS9