Analysis of interatomic Contacts of Structural Units in PDB entry:
3VSC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VSC entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 2 chains in PDB entry 3VSC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2GLU 383
B
 ALA 2GLY 384
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 44 helices in PDB entry 3VSC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
7 10Right-handed 310
Helix 2
2
A
11 16Right-handed alpha
Helix 3
3
A
21 32Right-handed alpha
Helix 4
4
A
39 42Right-handed 310
Helix 5
5
A
43 54Right-handed alpha
Helix 6
6
A
86 94Right-handed alpha
Helix 7
7
A
106 108Right-handed 310
Helix 8
8
A
118 120Right-handed 310
Helix 9
9
A
127 139Right-handed alpha
Helix 10
10
A
154 167Right-handed alpha
Helix 11
11
A
180 190Right-handed alpha
Helix 12
12
A
203 205Right-handed 310
Helix 13
13
A
206 218Right-handed alpha
Helix 14
14
A
227 237Right-handed alpha
Helix 15
15
A
237 250Right-handed alpha
Helix 16
16
A
263 277Right-handed alpha
Helix 17
17
A
298 302Right-handed 310
Helix 18
18
A
303 309Right-handed alpha
Helix 19
19
A
319 335Right-handed alpha
Helix 20
20
A
339 355Right-handed alpha
Helix 21
21
A
370 373Right-handed 310
Helix 22
22
A
374 383Right-handed alpha
Helix 23
23
B
7 10Right-handed 310
Helix 24
24
B
11 16Right-handed alpha
Helix 25
25
B
21 32Right-handed alpha
Helix 26
26
B
39 42Right-handed 310
Helix 27
27
B
43 53Right-handed alpha
Helix 28
28
B
86 94Right-handed alpha
Helix 29
29
B
106 108Right-handed 310
Helix 30
30
B
118 120Right-handed 310
Helix 31
31
B
127 139Right-handed alpha
Helix 32
32
B
154 168Right-handed alpha
Helix 33
33
B
180 190Right-handed alpha
Helix 34
34
B
203 205Right-handed 310
Helix 35
35
B
206 218Right-handed alpha
Helix 36
36
B
227 237Right-handed alpha
Helix 37
37
B
237 250Right-handed alpha
Helix 38
38
B
263 277Right-handed alpha
Helix 39
39
B
298 302Right-handed 310
Helix 40
40
B
303 309Right-handed alpha
Helix 41
41
B
319 335Right-handed alpha
Helix 42
42
B
339 356Right-handed alpha
Helix 43
43
B
370 373Right-handed 310
Helix 44
44
B
374 383Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 3VSC. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 5first strand
Strand 2
A
57 59anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 35first strand
Strand 2
A
65 67anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 84first strand
Strand 2
B
99 101parallel
Strand 3
B
110 116anti-parallel
Strand 4
B
361 367parallel
Strand 5
B
253 258parallel
Strand 6
B
281 287parallel
Strand 7
B
314 318parallel
Back to list of sheets
Back to top of page

There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
314 318first strand
Strand 2
A
281 287parallel
Strand 3
A
253 258parallel
Strand 4
A
361 367parallel
Strand 5
A
110 116parallel
Strand 6
A
99 101anti-parallel
Strand 7
B
83 84parallel
Back to list of sheets
Back to top of page

There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
193 197first strand
Strand 2
A
170 176parallel
Strand 3
A
147 151parallel
Strand 4
A
220 221parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 5first strand
Strand 2
B
57 59anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
33 35first strand
Strand 2
B
65 67anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
193 197first strand
Strand 2
B
170 176parallel
Strand 3
B
147 151parallel
Strand 4
B
220 221parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il