Analysis of interatomic Contacts of Structural Units in PDB entry:
3VSJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VSJ entry

There are 4 chains in PDB entry 3VSJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2LEU 271
B
 MET 1ASP 303
C
 THR 2LEU 271
D
 MET 1LEU 299
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 46 helices in PDB entry 3VSJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 18Right-handed alpha
Helix 2
2
A
21 41Right-handed alpha
Helix 3
3
A
76 80Right-handed 310
Helix 4
4
A
89 103Right-handed alpha
Helix 5
5
A
118 129Right-handed alpha
Helix 6
6
A
147 165Right-handed alpha
Helix 7
7
A
187 191Right-handed 310
Helix 8
8
A
195 212Right-handed alpha
Helix 9
9
A
213 228Right-handed alpha
Helix 10
10
A
230 233Right-handed 310
Helix 11
11
A
234 244Right-handed alpha
Helix 12
12
B
15 20Right-handed alpha
Helix 13
13
B
34 52Right-handed alpha
Helix 14
14
B
99 113Right-handed alpha
Helix 15
15
B
128 139Right-handed alpha
Helix 16
16
B
153 158Right-handed alpha
Helix 17
17
B
159 182Right-handed alpha
Helix 18
18
B
207 211Right-handed 310
Helix 19
19
B
215 232Right-handed alpha
Helix 20
20
B
233 249Right-handed alpha
Helix 21
21
B
250 254Right-handed 310
Helix 22
22
B
255 264Right-handed alpha
Helix 23
23
B
291 295Right-handed alpha
Helix 24
24
C
13 18Right-handed alpha
Helix 25
25
C
21 41Right-handed alpha
Helix 26
26
C
76 80Right-handed 310
Helix 27
27
C
89 100Right-handed alpha
Helix 28
28
C
101 104Right-handed 310
Helix 29
29
C
118 129Right-handed alpha
Helix 30
30
C
147 165Right-handed alpha
Helix 31
31
C
187 191Right-handed 310
Helix 32
32
C
195 212Right-handed alpha
Helix 33
33
C
213 228Right-handed alpha
Helix 34
34
C
230 233Right-handed 310
Helix 35
35
C
234 244Right-handed alpha
Helix 36
36
D
15 22Right-handed alpha
Helix 37
37
D
34 52Right-handed alpha
Helix 38
38
D
99 113Right-handed alpha
Helix 39
39
D
128 139Right-handed alpha
Helix 40
40
D
153 158Right-handed alpha
Helix 41
41
D
159 182Right-handed alpha
Helix 42
42
D
207 211Right-handed 310
Helix 43
43
D
215 231Right-handed alpha
Helix 44
44
D
233 249Right-handed alpha
Helix 45
45
D
250 254Right-handed 310
Helix 46
46
D
255 265Right-handed alpha
Back to top of page

There are 13 sheets in PDB entry 3VSJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
137 143first strand
Strand 2
A
45 55parallel
Strand 3
A
169 174parallel
Strand 4
A
3 9parallel
Strand 5
A
262 270anti-parallel
Strand 6
A
250 259anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 62first strand
Strand 2
A
107 110parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 71first strand
Strand 2
A
82 87anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
146 152first strand
Strand 2
B
55 65parallel
Strand 3
B
184 189parallel
Strand 4
B
2 10parallel
Strand 5
B
282 290anti-parallel
Strand 6
B
272 279anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
146 152first strand
Strand 2
B
55 65parallel
Strand 3
B
184 189parallel
Strand 4
B
2 10parallel
Strand 5
B
298 301anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
69 72first strand
Strand 2
B
117 120parallel
Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
76 82first strand
Strand 2
B
91 97anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
137 143first strand
Strand 2
C
45 55parallel
Strand 3
C
169 174parallel
Strand 4
C
3 9parallel
Strand 5
C
262 269anti-parallel
Strand 6
C
251 259anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
59 62first strand
Strand 2
C
107 110parallel
Back to list of sheets
Back to top of page

There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
66 71first strand
Strand 2
C
82 87anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
146 152first strand
Strand 2
D
55 65parallel
Strand 3
D
184 189parallel
Strand 4
D
4 10parallel
Strand 5
D
282 290anti-parallel
Strand 6
D
272 279anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
69 72first strand
Strand 2
D
117 120parallel
Back to list of sheets
Back to top of page

There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
76 82first strand
Strand 2
D
91 97anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il