Analysis of interatomic Contacts of Structural Units in PDB entry:
3VSR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VSR entry

There is 1 chain in PDB entry 3VSR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 40PHE 532
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 3VSR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
65 70Right-handed alpha
Helix 2
2
A
70 75Right-handed alpha
Helix 3
3
A
88 92Right-handed 310
Helix 4
4
A
142 150Right-handed 310
Helix 5
5
A
183 188Right-handed 310
Helix 6
6
A
306 310Right-handed 310
Helix 7
7
A
313 318Right-handed alpha
Helix 8
8
A
328 335Right-handed alpha
Helix 9
9
A
336 340Right-handed 310
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There are 8 sheets in PDB entry 3VSR. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 54first strand
Strand 2
A
415 416anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 63first strand
Strand 2
A
357 365parallel
Strand 3
A
342 349anti-parallel
Strand 4
A
296 302anti-parallel
Strand 5
A
281 286anti-parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
173 177first strand
Strand 2
A
151 158anti-parallel
Strand 3
A
129 138anti-parallel
Strand 4
A
108 117anti-parallel
Strand 5
A
195 205parallel
Strand 6
A
210 220anti-parallel
Strand 7
A
233 246anti-parallel
Strand 8
A
249 262anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
173 177first strand
Strand 2
A
151 158anti-parallel
Strand 3
A
129 138anti-parallel
Strand 4
A
124 126anti-parallel
Strand 5
A
524 526parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
374 381first strand
Strand 2
A
384 391anti-parallel
Strand 3
A
405 411anti-parallel
Strand 4
A
419 420anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
374 381first strand
Strand 2
A
384 391anti-parallel
Strand 3
A
405 411anti-parallel
Strand 4
A
427 430anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
457 461first strand
Strand 2
A
466 476anti-parallel
Strand 3
A
488 494anti-parallel
Strand 4
A
503 505anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
479 486first strand
Strand 2
A
466 476anti-parallel
Strand 3
A
488 494anti-parallel
Strand 4
A
514 517anti-parallel
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