Analysis of interatomic Contacts of Structural Units in PDB entry:
3VST

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3VST entry

There are 4 chains in PDB entry 3VST (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	TRP 638
B	MET 1	TRP 638
C	MET 1	TRP 638
D	MET 1	TRP 638

There are 44 helices in PDB entry 3VST. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	23	31	Right-handed alpha
Helix 2	2	A	97	99	Right-handed 310
Helix 3	3	A	138	143	Right-handed 310
Helix 4	4	A	164	169	Right-handed 310
Helix 5	5	A	269	273	Right-handed 310
Helix 6	6	A	275	281	Right-handed alpha
Helix 7	7	A	284	299	Right-handed alpha
Helix 8	8	A	491	495	Right-handed 310
Helix 9	9	A	500	509	Right-handed alpha
Helix 10	10	A	514	520	Right-handed alpha
Helix 11	11	A	571	577	Right-handed 310
Helix 12	12	B	23	31	Right-handed alpha
Helix 13	13	B	97	99	Right-handed 310
Helix 14	14	B	138	143	Right-handed 310
Helix 15	15	B	165	169	Right-handed 310
Helix 16	16	B	269	273	Right-handed 310
Helix 17	17	B	275	281	Right-handed alpha
Helix 18	18	B	284	299	Right-handed alpha
Helix 19	19	B	491	495	Right-handed 310
Helix 20	20	B	500	509	Right-handed alpha
Helix 21	21	B	514	520	Right-handed alpha
Helix 22	22	B	571	577	Right-handed 310
Helix 23	23	C	23	31	Right-handed alpha
Helix 24	24	C	97	99	Right-handed 310
Helix 25	25	C	138	143	Right-handed 310
Helix 26	26	C	165	169	Right-handed 310
Helix 27	27	C	269	273	Right-handed 310
Helix 28	28	C	275	281	Right-handed alpha
Helix 29	29	C	284	299	Right-handed alpha
Helix 30	30	C	491	495	Right-handed 310
Helix 31	31	C	500	509	Right-handed alpha
Helix 32	32	C	514	520	Right-handed alpha
Helix 33	33	C	571	577	Right-handed 310
Helix 34	34	D	23	31	Right-handed alpha
Helix 35	35	D	97	99	Right-handed 310
Helix 36	36	D	138	143	Right-handed 310
Helix 37	37	D	165	169	Right-handed 310
Helix 38	38	D	269	273	Right-handed 310
Helix 39	39	D	275	281	Right-handed alpha
Helix 40	40	D	284	299	Right-handed alpha
Helix 41	41	D	491	495	Right-handed 310
Helix 42	42	D	500	509	Right-handed alpha
Helix 43	43	D	514	520	Right-handed alpha
Helix 44	44	D	571	577	Right-handed 310

There are 33 sheets in PDB entry 3VST. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG,

There are 13 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	5	first strand
Strand 2	A	36	39	parallel
Strand 3	A	61	65	parallel
Strand 4	A	216	219	parallel
Strand 5	A	250	252	parallel
Strand 6	A	310	312	parallel
Strand 7	A	334	336	parallel
Strand 8	A	366	368	parallel
Strand 9	A	389	391	parallel
Strand 10	A	411	414	parallel
Strand 11	A	431	434	parallel
Strand 12	A	473	476	parallel
Strand 13	A	525	528	parallel

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There are 13 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	45	first strand
Strand 2	A	71	74	parallel
Strand 3	A	222	226	parallel
Strand 4	A	255	259	parallel
Strand 5	A	315	319	parallel
Strand 6	A	339	343	parallel
Strand 7	A	371	375	parallel
Strand 8	A	394	396	parallel
Strand 9	A	417	418	parallel
Strand 10	A	437	438	parallel
Strand 11	A	479	481	parallel
Strand 12	A	531	533	parallel
Strand 13	A	546	548	parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	76	78	first strand
Strand 2	A	197	200	anti-parallel
Strand 3	A	126	128	anti-parallel
Strand 4	A	131	132	anti-parallel

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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	86	first strand
Strand 2	A	89	95	anti-parallel
Strand 3	A	180	186	anti-parallel
Strand 4	A	171	176	anti-parallel
Strand 5	A	134	135	parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	150	153	first strand
Strand 2	A	158	161	anti-parallel

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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	262	265	first strand
Strand 2	A	322	327	parallel
Strand 3	A	357	360	parallel
Strand 4	A	379	382	parallel
Strand 5	A	402	405	parallel
Strand 6	A	422	427	parallel
Strand 7	A	441	444	parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	447	455	first strand
Strand 2	A	462	468	anti-parallel

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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	556	559	first strand
Strand 2	A	564	570	anti-parallel
Strand 3	A	631	638	anti-parallel

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There are 13 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	5	first strand
Strand 2	B	36	39	parallel
Strand 3	B	61	65	parallel
Strand 4	B	216	219	parallel
Strand 5	B	250	252	parallel
Strand 6	B	310	312	parallel
Strand 7	B	334	336	parallel
Strand 8	B	366	368	parallel
Strand 9	B	389	391	parallel
Strand 10	B	411	414	parallel
Strand 11	B	431	434	parallel
Strand 12	B	474	476	parallel
Strand 13	B	526	528	parallel

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There are 13 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	42	45	first strand
Strand 2	B	71	74	parallel
Strand 3	B	222	226	parallel
Strand 4	B	255	259	parallel
Strand 5	B	315	319	parallel
Strand 6	B	339	343	parallel
Strand 7	B	371	375	parallel
Strand 8	B	394	396	parallel
Strand 9	B	417	418	parallel
Strand 10	B	437	438	parallel
Strand 11	B	479	481	parallel
Strand 12	B	531	533	parallel
Strand 13	B	546	548	parallel

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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	76	78	first strand
Strand 2	B	197	200	anti-parallel
Strand 3	B	126	128	anti-parallel
Strand 4	B	131	132	anti-parallel

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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	83	86	first strand
Strand 2	B	89	95	anti-parallel
Strand 3	B	180	186	anti-parallel
Strand 4	B	171	176	anti-parallel
Strand 5	B	134	135	parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	150	153	first strand
Strand 2	B	158	161	anti-parallel

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There are 7 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	262	265	first strand
Strand 2	B	322	327	parallel
Strand 3	B	357	360	parallel
Strand 4	B	379	382	parallel
Strand 5	B	402	405	parallel
Strand 6	B	422	427	parallel
Strand 7	B	441	444	parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	447	455	first strand
Strand 2	B	462	468	anti-parallel

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There are 3 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	556	559	first strand
Strand 2	B	564	570	anti-parallel
Strand 3	B	631	638	anti-parallel

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There are 13 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2	5	first strand
Strand 2	C	36	39	parallel
Strand 3	C	61	65	parallel
Strand 4	C	216	219	parallel
Strand 5	C	250	252	parallel
Strand 6	C	310	312	parallel
Strand 7	C	334	336	parallel
Strand 8	C	366	368	parallel
Strand 9	C	389	391	parallel
Strand 10	C	411	414	parallel
Strand 11	C	431	434	parallel
Strand 12	C	474	476	parallel
Strand 13	C	526	528	parallel

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There are 13 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	45	first strand
Strand 2	C	71	74	parallel
Strand 3	C	222	226	parallel
Strand 4	C	255	259	parallel
Strand 5	C	315	319	parallel
Strand 6	C	339	343	parallel
Strand 7	C	371	375	parallel
Strand 8	C	394	396	parallel
Strand 9	C	417	418	parallel
Strand 10	C	437	438	parallel
Strand 11	C	479	481	parallel
Strand 12	C	531	533	parallel
Strand 13	C	546	548	parallel

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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	76	78	first strand
Strand 2	C	197	200	anti-parallel
Strand 3	C	126	128	anti-parallel
Strand 4	C	131	132	anti-parallel

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There are 5 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	83	86	first strand
Strand 2	C	89	95	anti-parallel
Strand 3	C	180	186	anti-parallel
Strand 4	C	171	176	anti-parallel
Strand 5	C	134	135	parallel

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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	150	153	first strand
Strand 2	C	158	161	anti-parallel

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There are 2 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	262	265	first strand
Strand 2	C	322	325	parallel

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There are 5 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	357	359	first strand
Strand 2	C	379	382	parallel
Strand 3	C	402	405	parallel
Strand 4	C	422	427	parallel
Strand 5	C	441	444	parallel

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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	447	455	first strand
Strand 2	C	462	468	anti-parallel

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There are 3 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	556	559	first strand
Strand 2	C	564	570	anti-parallel
Strand 3	C	631	638	anti-parallel

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There are 13 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2	5	first strand
Strand 2	D	36	39	parallel
Strand 3	D	61	65	parallel
Strand 4	D	216	219	parallel
Strand 5	D	250	252	parallel
Strand 6	D	310	312	parallel
Strand 7	D	334	336	parallel
Strand 8	D	366	368	parallel
Strand 9	D	389	391	parallel
Strand 10	D	411	414	parallel
Strand 11	D	431	434	parallel
Strand 12	D	474	476	parallel
Strand 13	D	526	528	parallel

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There are 13 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	42	45	first strand
Strand 2	D	71	74	parallel
Strand 3	D	222	226	parallel
Strand 4	D	255	259	parallel
Strand 5	D	315	319	parallel
Strand 6	D	339	343	parallel
Strand 7	D	371	375	parallel
Strand 8	D	394	396	parallel
Strand 9	D	417	418	parallel
Strand 10	D	437	438	parallel
Strand 11	D	479	481	parallel
Strand 12	D	531	533	parallel
Strand 13	D	546	548	parallel

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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	76	78	first strand
Strand 2	D	197	200	anti-parallel
Strand 3	D	126	128	anti-parallel
Strand 4	D	131	132	anti-parallel

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There are 5 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	83	86	first strand
Strand 2	D	89	95	anti-parallel
Strand 3	D	180	186	anti-parallel
Strand 4	D	171	176	anti-parallel
Strand 5	D	134	135	parallel

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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	150	153	first strand
Strand 2	D	158	161	anti-parallel

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There are 7 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	262	265	first strand
Strand 2	D	322	327	parallel
Strand 3	D	357	360	parallel
Strand 4	D	379	382	parallel
Strand 5	D	402	405	parallel
Strand 6	D	422	427	parallel
Strand 7	D	441	444	parallel

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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	447	455	first strand
Strand 2	D	462	468	anti-parallel

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There are 3 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	556	559	first strand
Strand 2	D	564	570	anti-parallel
Strand 3	D	631	638	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3VST

Analysis of interatomic Contacts of Structural Units in PDB entry:
3VST