Analysis of interatomic Contacts of Structural Units in PDB entry:
3VT2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VT2 entry

There are 6 chains in PDB entry 3VT2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLU 33VAL 493
B
GLU 33VAL 493
C
GLY -18VAL 493
D
GLU 33VAL 493
E
GLU 33VAL 493
F
GLU 33VAL 493
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 54 helices in PDB entry 3VT2. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
104 108Right-handed 310
Helix 2
2
A
304 309Right-handed 310
Helix 3
3
A
311 315Right-handed 310
Helix 4
4
A
372 374Right-handed 310
Helix 5
5
A
389 392Right-handed 310
Helix 6
6
A
419 421Right-handed 310
Helix 7
7
A
436 438Right-handed 310
Helix 8
8
A
466 468Right-handed 310
Helix 9
9
A
483 486Right-handed 310
Helix 10
10
B
103 107Right-handed 310
Helix 11
11
B
304 309Right-handed 310
Helix 12
12
B
311 315Right-handed 310
Helix 13
13
B
372 374Right-handed 310
Helix 14
14
B
419 421Right-handed 310
Helix 15
15
B
436 438Right-handed 310
Helix 16
16
B
466 468Right-handed 310
Helix 17
17
B
483 486Right-handed 310
Helix 18
18
C
103 107Right-handed 310
Helix 19
19
C
163 167Right-handed 310
Helix 20
20
C
304 309Right-handed 310
Helix 21
21
C
311 315Right-handed 310
Helix 22
22
C
372 374Right-handed 310
Helix 23
23
C
389 392Right-handed 310
Helix 24
24
C
419 421Right-handed 310
Helix 25
25
C
436 439Right-handed 310
Helix 26
26
C
466 468Right-handed 310
Helix 27
27
C
483 486Right-handed 310
Helix 28
28
D
103 107Right-handed 310
Helix 29
29
D
163 167Right-handed 310
Helix 30
30
D
304 309Right-handed 310
Helix 31
31
D
311 315Right-handed 310
Helix 32
32
D
372 374Right-handed 310
Helix 33
33
D
419 421Right-handed 310
Helix 34
34
D
436 438Right-handed 310
Helix 35
35
D
466 468Right-handed 310
Helix 36
36
D
483 487Right-handed 310
Helix 37
37
E
103 109Right-handed 310
Helix 38
38
E
163 167Right-handed 310
Helix 39
39
E
304 309Right-handed 310
Helix 40
40
E
311 315Right-handed 310
Helix 41
41
E
372 374Right-handed 310
Helix 42
42
E
389 392Right-handed 310
Helix 43
43
E
419 421Right-handed 310
Helix 44
44
E
436 439Right-handed 310
Helix 45
45
E
466 468Right-handed 310
Helix 46
46
E
483 486Right-handed 310
Helix 47
47
F
103 107Right-handed 310
Helix 48
48
F
304 309Right-handed 310
Helix 49
49
F
311 315Right-handed 310
Helix 50
50
F
372 374Right-handed 310
Helix 51
51
F
389 392Right-handed 310
Helix 52
52
F
419 421Right-handed 310
Helix 53
53
F
436 439Right-handed 310
Helix 54
54
F
466 468Right-handed 310
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There are 63 sheets in PDB entry 3VT2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8, AF9, AG1, AG2, AG3, AG4, AG5, AG6, AG7, AG8, AG9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
35 37first strand
Strand 2
A
337 341anti-parallel
Strand 3
A
346 349anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
53 60first strand
Strand 2
A
63 71anti-parallel
Strand 3
A
77 85anti-parallel
Strand 4
A
92 99anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
110 118first strand
Strand 2
A
125 132anti-parallel
Strand 3
A
141 147anti-parallel
Strand 4
A
155 160anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
169 170first strand
Strand 2
A
173 174anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
181 185first strand
Strand 2
A
191 197anti-parallel
Strand 3
A
202 208anti-parallel
Strand 4
A
215 222anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
232 235first strand
Strand 2
A
240 244anti-parallel
Strand 3
A
255 260anti-parallel
Strand 4
A
271 273anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
282 290first strand
Strand 2
A
295 303anti-parallel
Strand 3
A
316 321anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
323 326first strand
Strand 2
A
329 331anti-parallel
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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
357 361first strand
Strand 2
A
394 398anti-parallel
Strand 3
A
403 408anti-parallel
Strand 4
A
440 447anti-parallel
Strand 5
A
450 455anti-parallel
Strand 6
A
488 492anti-parallel
Strand 7
A
357 361anti-parallel
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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
367 370first strand
Strand 2
A
379 384anti-parallel
Strand 3
A
414 417first strand
Strand 4
A
426 431anti-parallel
Strand 5
A
461 464first strand
Strand 6
A
473 478anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
35 37first strand
Strand 2
B
337 341anti-parallel
Strand 3
B
346 349anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
57 59first strand
Strand 2
B
64 70anti-parallel
Strand 3
B
79 85anti-parallel
Strand 4
B
92 99anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
110 118first strand
Strand 2
B
125 132anti-parallel
Strand 3
B
141 147anti-parallel
Strand 4
B
155 160anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
169 170first strand
Strand 2
B
173 174anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
181 185first strand
Strand 2
B
191 197anti-parallel
Strand 3
B
202 207anti-parallel
Strand 4
B
217 222anti-parallel
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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
232 236first strand
Strand 2
B
239 245anti-parallel
Strand 3
B
255 260anti-parallel
Strand 4
B
271 273anti-parallel
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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
282 290first strand
Strand 2
B
295 303anti-parallel
Strand 3
B
316 326anti-parallel
Strand 4
B
329 331anti-parallel
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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
357 361first strand
Strand 2
B
488 492anti-parallel
Strand 3
B
450 452anti-parallel
Strand 4
B
444 445anti-parallel
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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
367 370first strand
Strand 2
B
379 384anti-parallel
Strand 3
B
414 417first strand
Strand 4
B
426 431anti-parallel
Strand 5
B
461 464first strand
Strand 6
B
473 478anti-parallel
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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
394 398first strand
Strand 2
B
404 408anti-parallel
Strand 3
B
440 441anti-parallel
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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
35 37first strand
Strand 2
C
337 341anti-parallel
Strand 3
C
346 349anti-parallel
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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
57 60first strand
Strand 2
C
63 71anti-parallel
Strand 3
C
77 85anti-parallel
Strand 4
C
92 99anti-parallel
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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
110 118first strand
Strand 2
C
125 132anti-parallel
Strand 3
C
141 147anti-parallel
Strand 4
C
155 160anti-parallel
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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
181 185first strand
Strand 2
C
191 197anti-parallel
Strand 3
C
202 208anti-parallel
Strand 4
C
215 222anti-parallel
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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
229 235first strand
Strand 2
C
240 245anti-parallel
Strand 3
C
255 260anti-parallel
Strand 4
C
271 273anti-parallel
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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
282 290first strand
Strand 2
C
295 303anti-parallel
Strand 3
C
316 324anti-parallel
Strand 4
C
330 331anti-parallel
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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
357 361first strand
Strand 2
C
488 492anti-parallel
Strand 3
C
450 455anti-parallel
Strand 4
C
441 445anti-parallel
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There are 6 strands in AD1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
367 370first strand
Strand 2
C
379 384anti-parallel
Strand 3
C
414 417first strand
Strand 4
C
426 431anti-parallel
Strand 5
C
461 464first strand
Strand 6
C
473 478anti-parallel
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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
394 400first strand
Strand 2
C
403 408anti-parallel
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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
53 60first strand
Strand 2
D
63 71anti-parallel
Strand 3
D
77 85anti-parallel
Strand 4
D
92 99anti-parallel
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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
110 118first strand
Strand 2
D
125 132anti-parallel
Strand 3
D
141 147anti-parallel
Strand 4
D
155 160anti-parallel
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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
169 170first strand
Strand 2
D
173 174anti-parallel
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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
181 185first strand
Strand 2
D
191 197anti-parallel
Strand 3
D
202 208anti-parallel
Strand 4
D
215 222anti-parallel
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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
228 235first strand
Strand 2
D
240 246anti-parallel
Strand 3
D
255 260anti-parallel
Strand 4
D
271 273anti-parallel
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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
282 289first strand
Strand 2
D
296 303anti-parallel
Strand 3
D
316 321anti-parallel
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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
323 326first strand
Strand 2
D
329 331anti-parallel
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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
340 341first strand
Strand 2
D
346 347anti-parallel
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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
367 370first strand
Strand 2
D
381 384anti-parallel
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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
394 398first strand
Strand 2
D
404 408anti-parallel
Strand 3
D
440 441anti-parallel
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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
414 417first strand
Strand 2
D
428 431anti-parallel
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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
450 451first strand
Strand 2
D
488 489anti-parallel
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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
461 464first strand
Strand 2
D
475 478anti-parallel
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There are 3 strands in AE7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
35 37first strand
Strand 2
E
337 341anti-parallel
Strand 3
E
346 349anti-parallel
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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
57 60first strand
Strand 2
E
63 68anti-parallel
Strand 3
E
79 85anti-parallel
Strand 4
E
92 99anti-parallel
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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
110 118first strand
Strand 2
E
125 132anti-parallel
Strand 3
E
141 147anti-parallel
Strand 4
E
155 160anti-parallel
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There are 2 strands in AF1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
169 170first strand
Strand 2
E
173 174anti-parallel
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There are 4 strands in AF2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
181 185first strand
Strand 2
E
191 197anti-parallel
Strand 3
E
202 208anti-parallel
Strand 4
E
215 222anti-parallel
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There are 4 strands in AF3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
229 235first strand
Strand 2
E
240 245anti-parallel
Strand 3
E
256 260anti-parallel
Strand 4
E
271 272anti-parallel
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There are 3 strands in AF4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
282 290first strand
Strand 2
E
295 303anti-parallel
Strand 3
E
316 321anti-parallel
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There are 2 strands in AF5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
323 324first strand
Strand 2
E
330 331anti-parallel
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There are 4 strands in AF6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
357 361first strand
Strand 2
E
488 492anti-parallel
Strand 3
E
450 455anti-parallel
Strand 4
E
441 447anti-parallel
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There are 6 strands in AF7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
367 370first strand
Strand 2
E
379 384anti-parallel
Strand 3
E
414 417first strand
Strand 4
E
426 431anti-parallel
Strand 5
E
461 464first strand
Strand 6
E
473 478anti-parallel
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There are 2 strands in AF8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
394 398first strand
Strand 2
E
404 408anti-parallel
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There are 3 strands in AF9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
35 37first strand
Strand 2
F
337 341anti-parallel
Strand 3
F
346 349anti-parallel
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There are 4 strands in AG1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
53 60first strand
Strand 2
F
63 71anti-parallel
Strand 3
F
77 85anti-parallel
Strand 4
F
92 99anti-parallel
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There are 4 strands in AG2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
109 118first strand
Strand 2
F
125 133anti-parallel
Strand 3
F
141 147anti-parallel
Strand 4
F
155 160anti-parallel
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There are 4 strands in AG3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
181 185first strand
Strand 2
F
191 197anti-parallel
Strand 3
F
202 208anti-parallel
Strand 4
F
215 222anti-parallel
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There are 4 strands in AG4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
229 236first strand
Strand 2
F
239 245anti-parallel
Strand 3
F
255 260anti-parallel
Strand 4
F
271 273anti-parallel
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There are 3 strands in AG5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
282 290first strand
Strand 2
F
295 303anti-parallel
Strand 3
F
316 321anti-parallel
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There are 4 strands in AG6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
357 361first strand
Strand 2
F
488 492anti-parallel
Strand 3
F
450 451anti-parallel
Strand 4
F
445 447anti-parallel
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There are 6 strands in AG7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
367 370first strand
Strand 2
F
379 384anti-parallel
Strand 3
F
414 417first strand
Strand 4
F
428 431anti-parallel
Strand 5
F
461 464first strand
Strand 6
F
473 478anti-parallel
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There are 2 strands in AG8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
394 398first strand
Strand 2
F
404 408anti-parallel
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There are 2 strands in AG9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
441 442first strand
Strand 2
F
454 455anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il