Analysis of interatomic Contacts of Structural Units in PDB entry:
3VTA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VTA entry

There are 2 chains in PDB entry 3VTA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 111LEU 730
B
 THR 111LEU 730
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 3VTA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
113 118Right-handed alpha
Helix 2
2
A
127 132Right-handed alpha
Helix 3
3
A
147 151Right-handed 310
Helix 4
4
A
203 214Right-handed alpha
Helix 5
5
A
251 266Right-handed alpha
Helix 6
6
A
278 285Right-handed 310
Helix 7
7
A
286 296Right-handed alpha
Helix 8
8
A
373 378Right-handed alpha
Helix 9
9
A
386 390Right-handed 310
Helix 10
10
A
402 411Right-handed alpha
Helix 11
11
A
437 452Right-handed alpha
Helix 12
12
A
523 542Right-handed alpha
Helix 13
13
A
546 557Right-handed alpha
Helix 14
14
A
569 574Right-handed alpha
Helix 15
15
A
579 584Right-handed alpha
Helix 16
16
A
593 597Right-handed 310
Helix 17
17
A
628 632Right-handed 310
Helix 18
18
B
113 118Right-handed alpha
Helix 19
19
B
127 133Right-handed alpha
Helix 20
20
B
203 214Right-handed alpha
Helix 21
21
B
251 266Right-handed alpha
Helix 22
22
B
285 296Right-handed alpha
Helix 23
23
B
373 380Right-handed alpha
Helix 24
24
B
381 384Right-handed 310
Helix 25
25
B
402 408Right-handed alpha
Helix 26
26
B
437 445Right-handed alpha
Helix 27
27
B
523 542Right-handed alpha
Helix 28
28
B
546 556Right-handed alpha
Helix 29
29
B
569 574Right-handed alpha
Helix 30
30
B
579 584Right-handed alpha
Helix 31
31
B
593 598Right-handed alpha
Helix 32
32
B
628 632Right-handed 310
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There are 16 sheets in PDB entry 3VTA. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
178 183first strand
Strand 2
A
238 243parallel
Strand 3
A
135 140parallel
Strand 4
A
269 272parallel
Strand 5
A
300 304parallel
Strand 6
A
323 328parallel
Strand 7
A
492 495parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
217 222first strand
Strand 2
A
225 230anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
245 246first strand
Strand 2
A
249 250anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
345 348first strand
Strand 2
A
332 340anti-parallel
Strand 3
A
456 458anti-parallel
Strand 4
A
357 359anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
345 348first strand
Strand 2
A
332 340anti-parallel
Strand 3
A
462 465anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
361 363first strand
Strand 2
A
394 396parallel
Strand 3
A
415 419parallel
Strand 4
A
433 436parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
499 502first strand
Strand 2
A
518 521anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
588 589first strand
Strand 2
A
647 657anti-parallel
Strand 3
A
692 701anti-parallel
Strand 4
A
675 680anti-parallel
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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
637 640first strand
Strand 2
A
722 728parallel
Strand 3
A
707 715anti-parallel
Strand 4
A
663 670anti-parallel
Strand 5
A
683 686anti-parallel
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There are 6 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
180 183first strand
Strand 2
B
238 243parallel
Strand 3
B
135 140parallel
Strand 4
B
269 272parallel
Strand 5
B
300 304parallel
Strand 6
B
323 325parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
245 246first strand
Strand 2
B
249 250anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
345 348first strand
Strand 2
B
332 340anti-parallel
Strand 3
B
456 465anti-parallel
Strand 4
B
357 358anti-parallel
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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
361 363first strand
Strand 2
B
394 396parallel
Strand 3
B
416 417parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
499 502first strand
Strand 2
B
518 521anti-parallel
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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
588 589first strand
Strand 2
B
647 657anti-parallel
Strand 3
B
692 701anti-parallel
Strand 4
B
675 680anti-parallel
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There are 5 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
637 640first strand
Strand 2
B
720 728parallel
Strand 3
B
707 715anti-parallel
Strand 4
B
663 670anti-parallel
Strand 5
B
683 686anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il