Analysis of interatomic Contacts of Structural Units in PDB entry:
3VTE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VTE entry

There is 1 chain in PDB entry 3VTE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 28HIS 545
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 3VTE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
29 42Right-handed alpha
Helix 2
2
A
59 67Right-handed alpha
Helix 3
3
A
70 74Right-handed 310
Helix 4
4
A
89 104Right-handed alpha
Helix 5
5
A
154 166Right-handed alpha
Helix 6
6
A
180 187Right-handed alpha
Helix 7
7
A
193 198Right-handed alpha
Helix 8
8
A
199 202Right-handed 310
Helix 9
9
A
218 223Right-handed alpha
Helix 10
10
A
223 231Right-handed alpha
Helix 11
11
A
234 238Right-handed 310
Helix 12
12
A
265 280Right-handed alpha
Helix 13
13
A
281 283Right-handed 310
Helix 14
14
A
320 332Right-handed alpha
Helix 15
15
A
333 336Right-handed 310
Helix 16
16
A
338 340Right-handed 310
Helix 17
17
A
346 354Right-handed alpha
Helix 18
18
A
366 372Right-handed 310
Helix 19
19
A
393 403Right-handed alpha
Helix 20
20
A
404 407Right-handed 310
Helix 21
21
A
420 425Right-handed 310
Helix 22
22
A
454 469Right-handed alpha
Helix 23
23
A
470 473Right-handed 310
Helix 24
24
A
486 490Right-handed 310
Helix 25
25
A
499 511Right-handed alpha
Helix 26
26
A
514 526Right-handed alpha
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There are 4 sheets in PDB entry 3VTE. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 53first strand
Strand 2
A
83 85anti-parallel
Strand 3
A
127 131parallel
Strand 4
A
106 110parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
138 141first strand
Strand 2
A
146 150anti-parallel
Strand 3
A
240 247anti-parallel
Strand 4
A
204 210anti-parallel
Strand 5
A
216 217anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 170first strand
Strand 2
A
249 250anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
342 345first strand
Strand 2
A
255 262anti-parallel
Strand 3
A
308 318anti-parallel
Strand 4
A
287 296anti-parallel
Strand 5
A
412 418anti-parallel
Strand 6
A
441 449anti-parallel
Strand 7
A
380 388anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il