Analysis of interatomic Contacts of Structural Units in PDB entry:
3VTF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VTF entry

There is 1 chain in PDB entry 3VTF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -7ALA 424
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 3VTF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 24Right-handed alpha
Helix 2
2
A
33 42Right-handed alpha
Helix 3
3
A
51 62Right-handed alpha
Helix 4
4
A
70 77Right-handed alpha
Helix 5
5
A
97 115Right-handed alpha
Helix 6
6
A
133 141Right-handed alpha
Helix 7
7
A
161 168Right-handed alpha
Helix 8
8
A
178 189Right-handed alpha
Helix 9
9
A
200 232Right-handed alpha
Helix 10
10
A
235 245Right-handed alpha
Helix 11
11
A
264 279Right-handed alpha
Helix 12
12
A
283 309Right-handed alpha
Helix 13
13
A
333 345Right-handed alpha
Helix 14
14
A
356 365Right-handed alpha
Helix 15
15
A
366 368Right-handed 310
Helix 16
16
A
373 381Right-handed alpha
Helix 17
17
A
390 396Right-handed 310
Helix 18
18
A
409 415Right-handed 310
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There are 2 sheets in PDB entry 3VTF. Click on sheet of interest to get list of strands forming it: A, B,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 67first strand
Strand 2
A
26 30parallel
Strand 3
A
3 7parallel
Strand 4
A
80 83parallel
Strand 5
A
119 122parallel
Strand 6
A
149 152parallel
Strand 7
A
172 176anti-parallel
Strand 8
A
196 199parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
369 370first strand
Strand 2
A
348 352parallel
Strand 3
A
315 319parallel
Strand 4
A
383 386parallel
Strand 5
A
402 405parallel
Strand 6
A
417 420parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il