Analysis of interatomic Contacts of Structural Units in PDB entry:
3VTH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VTH entry

There are 2 chains in PDB entry 3VTH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 3SER 755
B
 GLY 103PHE 616
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 3VTH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
24 36Right-handed alpha
Helix 2
2
A
56 70Right-handed alpha
Helix 3
3
A
114 122Right-handed alpha
Helix 4
4
A
142 146Right-handed 310
Helix 5
5
A
152 161Right-handed 310
Helix 6
6
A
164 172Right-handed alpha
Helix 7
7
A
203 214Right-handed alpha
Helix 8
8
A
234 246Right-handed alpha
Helix 9
9
A
258 266Right-handed alpha
Helix 10
10
A
269 278Right-handed alpha
Helix 11
11
A
311 321Right-handed alpha
Helix 12
12
A
340 348Right-handed alpha
Helix 13
13
A
432 450Right-handed alpha
Helix 14
14
A
465 474Right-handed alpha
Helix 15
15
A
482 495Right-handed alpha
Helix 16
16
A
545 550Right-handed alpha
Helix 17
17
A
550 560Right-handed alpha
Helix 18
18
A
561 565Right-handed 310
Helix 19
19
A
566 573Right-handed alpha
Helix 20
20
A
574 588Right-handed alpha
Helix 21
21
A
596 608Right-handed alpha
Helix 22
22
A
618 627Right-handed alpha
Helix 23
23
A
648 663Right-handed alpha
Helix 24
24
A
665 693Right-handed alpha
Helix 25
25
A
701 705Right-handed 310
Helix 26
26
A
706 720Right-handed alpha
Helix 27
27
A
733 735Right-handed 310
Helix 28
28
A
736 750Right-handed alpha
Helix 29
29
B
114 122Right-handed alpha
Helix 30
30
B
142 146Right-handed 310
Helix 31
31
B
152 161Right-handed 310
Helix 32
32
B
205 213Right-handed alpha
Helix 33
33
B
236 246Right-handed alpha
Helix 34
34
B
258 263Right-handed alpha
Helix 35
35
B
269 278Right-handed alpha
Helix 36
36
B
311 320Right-handed alpha
Helix 37
37
B
340 348Right-handed alpha
Helix 38
38
B
432 450Right-handed alpha
Helix 39
39
B
465 474Right-handed alpha
Helix 40
40
B
482 495Right-handed alpha
Helix 41
41
B
550 559Right-handed alpha
Helix 42
42
B
560 565Right-handed 310
Helix 43
43
B
566 573Right-handed alpha
Helix 44
44
B
574 588Right-handed alpha
Helix 45
45
B
596 608Right-handed alpha
Helix 46
46
B
618 628Right-handed alpha
Helix 47
47
B
648 662Right-handed alpha
Helix 48
48
B
665 693Right-handed alpha
Helix 49
49
B
701 705Right-handed 310
Helix 50
50
B
706 720Right-handed alpha
Helix 51
51
B
733 735Right-handed 310
Helix 52
52
B
736 751Right-handed alpha
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There are 13 sheets in PDB entry 3VTH. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 85first strand
Strand 2
A
10 19anti-parallel
Strand 3
A
48 55anti-parallel
Strand 4
A
39 45anti-parallel
Strand 5
A
93 95parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
193 196first strand
Strand 2
A
354 358anti-parallel
Strand 3
A
218 221parallel
Strand 4
A
226 229anti-parallel
Strand 5
A
328 329anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
325 326first strand
Strand 2
A
254 255anti-parallel
Strand 3
A
303 307parallel
Strand 4
A
283 287anti-parallel
Strand 5
A
370 371parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
373 374first strand
Strand 2
A
377 378anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
392 393first strand
Strand 2
A
420 423anti-parallel
Strand 3
A
414 417anti-parallel
Strand 4
A
402 404anti-parallel
Strand 5
A
456 460parallel
Strand 6
A
478 481parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
639 641first strand
Strand 2
A
645 647anti-parallel
Strand 3
A
530 536parallel
Strand 4
A
517 525anti-parallel
Strand 5
A
501 511anti-parallel
Strand 6
A
696 700parallel
Strand 7
A
723 726parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
539 542first strand
Strand 2
A
591 594anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
328 329first strand
Strand 2
B
226 229anti-parallel
Strand 3
B
218 221anti-parallel
Strand 4
B
354 356parallel
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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
325 326first strand
Strand 2
B
254 255anti-parallel
Strand 3
B
303 307parallel
Strand 4
B
283 287anti-parallel
Strand 5
B
370 371parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
373 374first strand
Strand 2
B
377 378anti-parallel
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There are 6 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
392 393first strand
Strand 2
B
420 423anti-parallel
Strand 3
B
414 417anti-parallel
Strand 4
B
402 404anti-parallel
Strand 5
B
456 460parallel
Strand 6
B
478 481parallel
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There are 7 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
640 641first strand
Strand 2
B
645 647anti-parallel
Strand 3
B
530 536parallel
Strand 4
B
517 525anti-parallel
Strand 5
B
501 511anti-parallel
Strand 6
B
696 700parallel
Strand 7
B
723 726parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
539 542first strand
Strand 2
B
591 594anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il