Analysis of interatomic Contacts of Structural Units in PDB entry:
3VTI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VTI entry

There are 2 chains in PDB entry 3VTI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 8GLY 751
B
 GLN 8GLY 512
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 77 helices in PDB entry 3VTI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
24 36Right-handed alpha
Helix 2
2
A
56 70Right-handed alpha
Helix 3
3
A
114 122Right-handed alpha
Helix 4
4
A
142 146Right-handed 310
Helix 5
5
A
152 156Right-handed 310
Helix 6
6
A
164 173Right-handed alpha
Helix 7
7
A
203 214Right-handed alpha
Helix 8
8
A
234 246Right-handed alpha
Helix 9
9
A
258 266Right-handed alpha
Helix 10
10
A
269 278Right-handed alpha
Helix 11
11
A
311 319Right-handed alpha
Helix 12
12
A
340 348Right-handed alpha
Helix 13
13
A
432 450Right-handed alpha
Helix 14
14
A
465 474Right-handed alpha
Helix 15
15
A
482 495Right-handed alpha
Helix 16
16
A
544 550Right-handed alpha
Helix 17
17
A
550 559Right-handed alpha
Helix 18
18
A
562 565Right-handed 310
Helix 19
19
A
566 572Right-handed alpha
Helix 20
20
A
574 587Right-handed alpha
Helix 21
21
A
596 608Right-handed alpha
Helix 22
22
A
618 628Right-handed alpha
Helix 23
23
A
648 662Right-handed alpha
Helix 24
24
A
665 693Right-handed alpha
Helix 25
25
A
701 705Right-handed 310
Helix 26
26
A
706 719Right-handed alpha
Helix 27
27
A
733 735Right-handed 310
Helix 28
28
A
736 751Right-handed alpha
Helix 29
29
B
24 36Right-handed alpha
Helix 30
30
B
57 70Right-handed alpha
Helix 31
31
B
114 122Right-handed alpha
Helix 32
32
B
142 146Right-handed 310
Helix 33
33
B
152 156Right-handed 310
Helix 34
34
B
164 173Right-handed alpha
Helix 35
35
B
203 214Right-handed alpha
Helix 36
36
B
234 246Right-handed alpha
Helix 37
37
B
258 266Right-handed alpha
Helix 38
38
B
269 278Right-handed alpha
Helix 39
39
B
311 319Right-handed alpha
Helix 40
40
B
340 348Right-handed alpha
Helix 41
41
B
432 451Right-handed alpha
Helix 42
42
B
465 474Right-handed alpha
Helix 43
43
B
482 495Right-handed alpha
Helix 44
44
B
544 550Right-handed alpha
Helix 45
45
B
550 560Right-handed alpha
Helix 46
46
B
561 565Right-handed 310
Helix 47
47
B
566 572Right-handed alpha
Helix 48
48
B
574 587Right-handed alpha
Helix 49
49
B
596 608Right-handed alpha
Helix 50
50
B
618 627Right-handed alpha
Helix 51
51
B
648 662Right-handed alpha
Helix 52
52
B
665 693Right-handed alpha
Helix 53
53
B
701 705Right-handed 310
Helix 54
54
B
706 719Right-handed alpha
Helix 55
55
B
736 751Right-handed alpha
Helix 56
56
C
40 49Right-handed alpha
Helix 57
57
C
51 57Right-handed alpha
Helix 58
58
C
86 98Right-handed alpha
Helix 59
59
C
119 138Right-handed alpha
Helix 60
60
C
191 202Right-handed alpha
Helix 61
61
C
217 225Right-handed alpha
Helix 62
62
C
226 229Right-handed 310
Helix 63
63
C
240 254Right-handed alpha
Helix 64
64
C
262 264Right-handed 310
Helix 65
65
C
267 278Right-handed alpha
Helix 66
66
C
280 284Right-handed 310
Helix 67
67
C
298 308Right-handed alpha
Helix 68
68
D
40 49Right-handed alpha
Helix 69
69
D
86 100Right-handed alpha
Helix 70
70
D
119 138Right-handed alpha
Helix 71
71
D
191 202Right-handed alpha
Helix 72
72
D
217 225Right-handed alpha
Helix 73
73
D
226 228Right-handed 310
Helix 74
74
D
240 254Right-handed alpha
Helix 75
75
D
262 264Right-handed 310
Helix 76
76
D
267 278Right-handed alpha
Helix 77
77
D
298 308Right-handed alpha
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There are 20 sheets in PDB entry 3VTI. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 84first strand
Strand 2
A
10 19anti-parallel
Strand 3
A
48 55anti-parallel
Strand 4
A
39 45anti-parallel
Strand 5
A
93 95parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
193 196first strand
Strand 2
A
354 358anti-parallel
Strand 3
A
218 221parallel
Strand 4
A
226 229anti-parallel
Strand 5
A
328 329anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
325 326first strand
Strand 2
A
254 255anti-parallel
Strand 3
A
303 307parallel
Strand 4
A
283 287anti-parallel
Strand 5
A
370 371parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
373 374first strand
Strand 2
A
377 378anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
392 393first strand
Strand 2
A
420 423anti-parallel
Strand 3
A
414 417anti-parallel
Strand 4
A
402 404anti-parallel
Strand 5
A
456 460parallel
Strand 6
A
478 481parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
639 641first strand
Strand 2
A
645 647anti-parallel
Strand 3
A
530 536parallel
Strand 4
A
520 525anti-parallel
Strand 5
A
501 506anti-parallel
Strand 6
A
696 700parallel
Strand 7
A
723 726parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
539 542first strand
Strand 2
A
591 594anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
76 84first strand
Strand 2
B
9 19anti-parallel
Strand 3
B
48 56anti-parallel
Strand 4
B
39 45anti-parallel
Strand 5
B
93 95parallel
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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
193 196first strand
Strand 2
B
354 358anti-parallel
Strand 3
B
218 221parallel
Strand 4
B
226 229anti-parallel
Strand 5
B
328 329anti-parallel
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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
325 326first strand
Strand 2
B
254 255anti-parallel
Strand 3
B
303 307parallel
Strand 4
B
283 287anti-parallel
Strand 5
B
370 371parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
373 374first strand
Strand 2
B
377 378anti-parallel
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There are 6 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
392 393first strand
Strand 2
B
420 423anti-parallel
Strand 3
B
414 417anti-parallel
Strand 4
B
402 404anti-parallel
Strand 5
B
456 460parallel
Strand 6
B
478 481parallel
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There are 7 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
639 641first strand
Strand 2
B
645 647anti-parallel
Strand 3
B
530 536parallel
Strand 4
B
517 525anti-parallel
Strand 5
B
501 511anti-parallel
Strand 6
B
696 700parallel
Strand 7
B
723 726parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
539 542first strand
Strand 2
B
591 594anti-parallel
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There are 5 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
61 63first strand
Strand 2
C
67 74anti-parallel
Strand 3
C
157 167anti-parallel
Strand 4
C
103 115anti-parallel
Strand 5
C
140 149parallel
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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
80 81first strand
Strand 2
C
84 85anti-parallel
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There are 7 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
231 235first strand
Strand 2
C
291 294anti-parallel
Strand 3
C
183 186anti-parallel
Strand 4
C
316 322anti-parallel
Strand 5
C
256 260anti-parallel
Strand 6
C
327 330parallel
Strand 7
C
336 338anti-parallel
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There are 5 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
61 63first strand
Strand 2
D
67 74anti-parallel
Strand 3
D
157 167anti-parallel
Strand 4
D
103 115anti-parallel
Strand 5
D
140 149parallel
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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
80 81first strand
Strand 2
D
84 85anti-parallel
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There are 7 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
231 235first strand
Strand 2
D
291 294anti-parallel
Strand 3
D
183 186anti-parallel
Strand 4
D
316 322anti-parallel
Strand 5
D
256 260anti-parallel
Strand 6
D
327 331parallel
Strand 7
D
335 338anti-parallel
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