Analysis of interatomic Contacts of Structural Units in PDB entry:
3VTR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VTR entry

There is 1 chain in PDB entry 3VTR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 23SER 594
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 22 helices in PDB entry 3VTR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
51 60Right-handed alpha
Helix 2
2
A
97 113Right-handed alpha
Helix 3
3
A
114 116Right-handed 310
Helix 4
4
A
171 184Right-handed alpha
Helix 5
5
A
224 238Right-handed alpha
Helix 6
6
A
261 268Right-handed alpha
Helix 7
7
A
276 290Right-handed alpha
Helix 8
8
A
321 325Right-handed 310
Helix 9
9
A
339 356Right-handed alpha
Helix 10
10
A
370 376Right-handed alpha
Helix 11
11
A
377 387Right-handed alpha
Helix 12
12
A
392 415Right-handed alpha
Helix 13
13
A
433 438Right-handed alpha
Helix 14
14
A
453 462Right-handed alpha
Helix 15
15
A
470 475Right-handed alpha
Helix 16
16
A
496 503Right-handed alpha
Helix 17
17
A
504 510Right-handed alpha
Helix 18
18
A
511 514Right-handed 310
Helix 19
19
A
532 538Right-handed alpha
Helix 20
20
A
539 551Right-handed alpha
Helix 21
21
A
555 573Right-handed alpha
Helix 22
22
A
582 588Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 3VTR. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 32first strand
Strand 2
A
35 40anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 74first strand
Strand 2
A
201 205anti-parallel
Strand 3
A
151 158anti-parallel
Strand 4
A
162 169anti-parallel
Strand 5
A
127 135parallel
Strand 6
A
79 91parallel
Strand 7
A
194 198anti-parallel
Strand 8
A
186 189anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
211 217first strand
Strand 2
A
242 246parallel
Strand 3
A
293 300parallel
Strand 4
A
362 365parallel
Strand 5
A
421 424parallel
Strand 6
A
443 447parallel
Strand 7
A
465 468parallel
Strand 8
A
516 523parallel
Strand 9
A
211 217parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
314 315first strand
Strand 2
A
333 334anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il