Analysis of interatomic Contacts of Structural Units in PDB entry:
3VTZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VTZ entry

There are 4 chains in PDB entry 3VTZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 2ALA 256
B
 GLU 2ALA 256
C
 GLU 2ALA 256
D
 GLU 2ALA 256
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 3VTZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 29Right-handed alpha
Helix 2
2
A
56 72Right-handed alpha
Helix 3
3
A
88 92Right-handed 310
Helix 4
4
A
93 105Right-handed alpha
Helix 5
5
A
105 123Right-handed alpha
Helix 6
6
A
132 136Right-handed 310
Helix 7
7
A
142 164Right-handed alpha
Helix 8
8
A
179 191Right-handed alpha
Helix 9
9
A
195 208Right-handed alpha
Helix 10
10
A
215 228Right-handed alpha
Helix 11
11
A
229 232Right-handed 310
Helix 12
12
A
244 248Right-handed 310
Helix 13
13
B
16 29Right-handed alpha
Helix 14
14
B
56 72Right-handed alpha
Helix 15
15
B
88 92Right-handed 310
Helix 16
16
B
93 105Right-handed alpha
Helix 17
17
B
105 123Right-handed alpha
Helix 18
18
B
132 136Right-handed 310
Helix 19
19
B
142 164Right-handed alpha
Helix 20
20
B
179 191Right-handed alpha
Helix 21
21
B
195 207Right-handed alpha
Helix 22
22
B
215 228Right-handed alpha
Helix 23
23
B
229 232Right-handed 310
Helix 24
24
B
244 248Right-handed 310
Helix 25
25
C
16 29Right-handed alpha
Helix 26
26
C
56 72Right-handed alpha
Helix 27
27
C
88 92Right-handed 310
Helix 28
28
C
93 105Right-handed alpha
Helix 29
29
C
105 123Right-handed alpha
Helix 30
30
C
132 136Right-handed 310
Helix 31
31
C
142 164Right-handed alpha
Helix 32
32
C
179 191Right-handed alpha
Helix 33
33
C
193 208Right-handed alpha
Helix 34
34
C
215 228Right-handed alpha
Helix 35
35
C
229 232Right-handed 310
Helix 36
36
C
244 248Right-handed 310
Helix 37
37
D
16 29Right-handed alpha
Helix 38
38
D
56 72Right-handed alpha
Helix 39
39
D
88 92Right-handed 310
Helix 40
40
D
93 105Right-handed alpha
Helix 41
41
D
105 123Right-handed alpha
Helix 42
42
D
132 136Right-handed 310
Helix 43
43
D
142 164Right-handed alpha
Helix 44
44
D
179 191Right-handed alpha
Helix 45
45
D
193 208Right-handed alpha
Helix 46
46
D
215 228Right-handed alpha
Helix 47
47
D
229 232Right-handed 310
Helix 48
48
D
244 248Right-handed 310
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There are 4 sheets in PDB entry 3VTZ. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 51first strand
Strand 2
A
32 37parallel
Strand 3
A
8 11parallel
Strand 4
A
76 79parallel
Strand 5
A
125 130parallel
Strand 6
A
167 174parallel
Strand 7
A
238 241parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
48 51first strand
Strand 2
B
32 37parallel
Strand 3
B
8 11parallel
Strand 4
B
76 79parallel
Strand 5
B
125 130parallel
Strand 6
B
167 174parallel
Strand 7
B
238 241parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
48 51first strand
Strand 2
C
32 37parallel
Strand 3
C
8 12parallel
Strand 4
C
76 79parallel
Strand 5
C
125 130parallel
Strand 6
C
167 174parallel
Strand 7
C
238 241parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
48 51first strand
Strand 2
D
32 37parallel
Strand 3
D
8 12parallel
Strand 4
D
76 79parallel
Strand 5
D
125 130parallel
Strand 6
D
167 174parallel
Strand 7
D
238 241parallel
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