Analysis of interatomic Contacts of Structural Units in PDB entry:
3VU0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VU0 entry

There are 3 chains in PDB entry 3VU0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 432LYS 593
B
 MSE 432LYS 593
C
 MSE 432LYS 593
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 30 helices in PDB entry 3VU0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
435 449Right-handed alpha
Helix 2
2
A
468 470Right-handed 310
Helix 3
3
A
471 478Right-handed alpha
Helix 4
4
A
491 501Right-handed alpha
Helix 5
5
A
503 515Right-handed alpha
Helix 6
6
A
524 526Right-handed 310
Helix 7
7
A
535 544Right-handed alpha
Helix 8
8
A
546 550Right-handed 310
Helix 9
9
A
551 560Right-handed alpha
Helix 10
10
A
562 569Right-handed alpha
Helix 11
11
B
435 449Right-handed alpha
Helix 12
12
B
468 470Right-handed 310
Helix 13
13
B
471 478Right-handed alpha
Helix 14
14
B
491 501Right-handed alpha
Helix 15
15
B
503 515Right-handed alpha
Helix 16
16
B
524 526Right-handed 310
Helix 17
17
B
535 544Right-handed alpha
Helix 18
18
B
546 550Right-handed 310
Helix 19
19
B
551 560Right-handed alpha
Helix 20
20
B
562 569Right-handed alpha
Helix 21
21
C
435 449Right-handed alpha
Helix 22
22
C
468 470Right-handed 310
Helix 23
23
C
471 478Right-handed alpha
Helix 24
24
C
491 501Right-handed alpha
Helix 25
25
C
503 514Right-handed alpha
Helix 26
26
C
524 526Right-handed 310
Helix 27
27
C
535 544Right-handed alpha
Helix 28
28
C
546 550Right-handed 310
Helix 29
29
C
551 560Right-handed alpha
Helix 30
30
C
562 569Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 3VU0. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
464 466first strand
Strand 2
A
516 522parallel
Strand 3
A
587 592anti-parallel
Strand 4
A
578 584anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
464 466first strand
Strand 2
B
516 522parallel
Strand 3
B
587 592anti-parallel
Strand 4
B
578 584anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
464 466first strand
Strand 2
C
516 522parallel
Strand 3
C
587 592anti-parallel
Strand 4
C
578 583anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il