Analysis of interatomic Contacts of Structural Units in PDB entry:
3VU2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VU2 entry

There are 2 chains in PDB entry 3VU2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 8GLU 699
B
 ASP 9GLU 699
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 64 helices in PDB entry 3VU2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 17Right-handed alpha
Helix 2
2
A
18 22Right-handed 310
Helix 3
3
A
23 46Right-handed alpha
Helix 4
4
A
47 52Right-handed alpha
Helix 5
5
A
53 57Right-handed 310
Helix 6
6
A
85 87Right-handed 310
Helix 7
7
A
163 167Right-handed 310
Helix 8
8
A
199 207Right-handed alpha
Helix 9
9
A
207 214Right-handed alpha
Helix 10
10
A
229 233Right-handed 310
Helix 11
11
A
249 263Right-handed alpha
Helix 12
12
A
283 288Right-handed 310
Helix 13
13
A
292 296Right-handed 310
Helix 14
14
A
300 305Right-handed 310
Helix 15
15
A
318 337Right-handed alpha
Helix 16
16
A
345 351Right-handed alpha
Helix 17
17
A
363 367Right-handed 310
Helix 18
18
A
373 391Right-handed alpha
Helix 19
19
A
410 414Right-handed 310
Helix 20
20
A
425 437Right-handed alpha
Helix 21
21
A
438 442Right-handed 310
Helix 22
22
A
443 453Right-handed alpha
Helix 23
23
A
466 472Right-handed alpha
Helix 24
24
A
476 483Right-handed alpha
Helix 25
25
A
484 488Right-handed 310
Helix 26
26
A
497 519Right-handed alpha
Helix 27
27
A
527 531Right-handed 310
Helix 28
28
A
540 544Right-handed 310
Helix 29
29
A
553 559Right-handed alpha
Helix 30
30
A
563 582Right-handed alpha
Helix 31
31
A
583 586Right-handed 310
Helix 32
32
A
641 645Right-handed 310
Helix 33
33
B
12 17Right-handed alpha
Helix 34
34
B
18 22Right-handed 310
Helix 35
35
B
23 46Right-handed alpha
Helix 36
36
B
47 52Right-handed alpha
Helix 37
37
B
53 57Right-handed 310
Helix 38
38
B
85 87Right-handed 310
Helix 39
39
B
163 167Right-handed 310
Helix 40
40
B
199 207Right-handed alpha
Helix 41
41
B
207 214Right-handed alpha
Helix 42
42
B
229 233Right-handed 310
Helix 43
43
B
245 248Right-handed 310
Helix 44
44
B
249 263Right-handed alpha
Helix 45
45
B
283 288Right-handed 310
Helix 46
46
B
292 296Right-handed 310
Helix 47
47
B
300 305Right-handed 310
Helix 48
48
B
318 337Right-handed alpha
Helix 49
49
B
345 351Right-handed alpha
Helix 50
50
B
363 367Right-handed 310
Helix 51
51
B
373 391Right-handed alpha
Helix 52
52
B
425 437Right-handed alpha
Helix 53
53
B
438 442Right-handed 310
Helix 54
54
B
443 453Right-handed alpha
Helix 55
55
B
466 472Right-handed alpha
Helix 56
56
B
476 483Right-handed alpha
Helix 57
57
B
484 488Right-handed 310
Helix 58
58
B
497 519Right-handed alpha
Helix 59
59
B
527 531Right-handed 310
Helix 60
60
B
540 544Right-handed 310
Helix 61
61
B
553 559Right-handed alpha
Helix 62
62
B
563 582Right-handed alpha
Helix 63
63
B
583 586Right-handed 310
Helix 64
64
B
641 645Right-handed 310
Back to top of page

There are 14 sheets in PDB entry 3VU2. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 63first strand
Strand 2
A
66 72anti-parallel
Strand 3
A
102 108anti-parallel
Strand 4
A
96 97anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 83first strand
Strand 2
A
122 127anti-parallel
Strand 3
A
134 136anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 145first strand
Strand 2
A
156 157anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
460 461first strand
Strand 2
A
420 422parallel
Strand 3
A
395 398parallel
Strand 4
A
340 344parallel
Strand 5
A
266 272parallel
Strand 6
A
218 221parallel
Strand 7
A
182 186parallel
Strand 8
A
522 525parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
225 226first strand
Strand 2
A
239 243anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
589 595first strand
Strand 2
A
600 605anti-parallel
Strand 3
A
608 613anti-parallel
Strand 4
A
686 692anti-parallel
Strand 5
A
632 638anti-parallel
Strand 6
A
656 657anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
620 627first strand
Strand 2
A
676 682anti-parallel
Strand 3
A
659 660anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
59 62first strand
Strand 2
B
66 72anti-parallel
Strand 3
B
102 108anti-parallel
Strand 4
B
96 97anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
78 83first strand
Strand 2
B
122 127anti-parallel
Strand 3
B
134 136anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
143 146first strand
Strand 2
B
155 158anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
182 186first strand
Strand 2
B
218 221parallel
Strand 3
B
266 272parallel
Strand 4
B
340 344parallel
Strand 5
B
395 398parallel
Strand 6
B
420 422parallel
Strand 7
B
460 462parallel
Strand 8
B
521 525parallel
Strand 9
B
182 186parallel
Back to list of sheets
Back to top of page

There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
225 226first strand
Strand 2
B
239 243anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
589 595first strand
Strand 2
B
600 605anti-parallel
Strand 3
B
608 613anti-parallel
Strand 4
B
686 692anti-parallel
Strand 5
B
632 638anti-parallel
Strand 6
B
656 657anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
620 627first strand
Strand 2
B
676 682anti-parallel
Strand 3
B
659 660anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il